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Datasets(10 / 167 results)
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Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment
Homo sapiens
Mus musculus
10x Visium
clampFISH 2.0 enables rapid, scalable amplified RNA detection in situ
Homo sapiens
ClampFISH
Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.
Mus musculus
10x Visium
scRNA
Checkpoint blockade-induced dermatitis and colitis are dominated by tissue resident memory T cells and Th1/Tc1 cytokines
Homo sapiens
10x Visium
The Deciphering of Mouse Uterine Microenvironment during Early Pregnancy
Mus musculus
10x visium
scRNA
Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage
Homo sapiens
GeoMx DSP
Spatiotemporal transcriptomes of orchid flowers
Phalaenopsis aphrodite
10x Visium
Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear
Oryctolagus cuniculus
10x Visium
Spatial gene expression-based, non-small cell lung carcinoma patients with paired brain metastases
Homo sapiens
GeoMx DSP
A cellular hierarchy in melanoma uncouples growth and metastasis
Mus
Homo sapiens
Mus musculus
10x visium
scRNA
Stereo-Seq
Publications(10 / 6,415 results)
More results >>
Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat.
Nat Commun,2023/2/28;14(1):1128.
Spatial multi-omics revealed the impact of tumor ecosystem heterogeneity on immunotherapy efficacy in patients with advanced non-small cell lung cancer treated with bispecific antibody.
J Immunother Cancer,2023/02;11(2)
Protocols for single-cell RNA-seq and spatial gene expression integration and interactive visualization.
STAR Protoc,2023/1/19;4(1):102047.
Mapping Spatiotemporal Heterogeneity in Tumor Profiles by Integrating High-Throughput Imaging and Omics Analysis.
ACS Omega,2023/2/21;8(7):6126-6138.
iSC.MEB: an R package for multi-sample spatial clustering analysis of spatial transcriptomics data.
Bioinform Adv,2023;3(1):vbad019.
Real-Time Monitoring and Modulation of Blood Pressure in a Rabbit Model of Ischemic Stroke.
J Vis Exp,2023/2/10;(192)
m6A RNA methylation correlates with immune microenvironment and immunotherapy response of melanoma.
J Invest Dermatol,2023/2/24;
SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains.
Cells,2023/2/13;12(4)
Project(8 / 8 results)
More results >>
StereoCell enables high accuracy single cell segmentation for spatial transcriptomic datasetSource: STOmics DB
(ID:
STT0000027
)
BGI Stereomics Stereo-Seq
Mus musculus
The Single-cell Stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leavesSource: STOmics DB
(ID:
STT0000023
)
BGI Stereomics Stereo-Seq
Arabidopsis thaliana
Spatial transcriptomics of brain for the postantal day 7 mouseSource: STOmics DB
(ID:
STT0000012
)
BGI Stereomics Stereo-Seq
Mus musculus
Spatial Transcriptomics Study of the Immunological Microenvironment of Cervical Squamous Cell CarcinomaSource: STOmics DB
(ID:
STT0000015
)
BGI Stereomics Stereo-Seq
Homo sapiens
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball patterned arraysSource: STOmics DB
(ID:
STT0000013
)
BGI Stereomics Stereo-Seq
Mus musculus
Spatial transcriptome uncovers the mouse lung architectures and functionsSource: STOmics DB
(ID:
STT0000018
)
BGI Stereomics Stereo-Seq
Mus musculus
Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesisSource: STOmics DB
(ID:
STT0000007
)
BGI Stereomics Stereo-Seq
Danio rerio
Spatiotemporal reconstruction of axolotl brain development and regeneration at single-nuclei resolutionSource: STOmics DB
(ID:
STT0000011
)
BGI Stereomics Stereo-Seq
Ambystoma mexicanum
Authors(10 / 36,986 results)
More results >>
Satija, Rahul (Satija R)
New York Genome Center, New York, USA. [email protected]
Stuart, Tim (Stuart T)
New York Genome Center, New York, NY, USA.
Butler, Andrew (Butler A)
New York Genome Center, New York, USA.
Stoeckius, Marlon (Stoeckius M)
Technology Innovation Lab, New York Genome Center, New York, NY 10013, USA.
Mauck, William M 3rd (Mauck WM 3rd)
Center for Genomics and Systems Biology, New York University, New York, NY 10003,
Hao, Yuhan (Hao Y)
Center for Genomics and Systems Biology, New York University, New York, NY 10003,
Hoffman, Paul (Hoffman P)
Center for Genomics and Systems Biology, New York University, New York, NY 10003,
Smibert, Peter (Smibert P)
Technology Innovation Lab, New York Genome Center, New York, NY 10013, USA.
Papalexi, Efthymia (Papalexi E)
Center for Genomics and Systems Biology, New York University, New York, NY 10003,
Hafemeister, Christoph (Hafemeister C)
New York Genome Center, New York, NY, USA.