Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment

Contributors: Barkley, Dalia; Yanai, Itai
Species: Homo sapiens, Mus musculus
Technology: 10x Visium
Spots: 25,529

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clampFISH 2.0 enables rapid, scalable amplified RNA detection in situ

Contributors: Goyal, Yogesh; Dardani, Ian; Raj, Arjun
Species: Homo sapiens
Technology: ClampFISH
Spots: 47,459


Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.

Contributors: Tsai, Li-Huei; Welch, Gwyneth M; Su, Qiao; Pfenning, Andreas R; Boix, Carles A; Kellis, Manolis; Schmauch, Eloi
Species: Mus musculus
Technology: 10x Visium, scRNA

Checkpoint blockade-induced dermatitis and colitis are dominated by tissue resident memory T cells and Th1/Tc1 cytokines

Contributors: Reschke, Robin; Gajewski, Thomas F; Yu, Jovian; Rouhani, Sherin J; Olson, Daniel J; Zha, Yuanyuan; Shapiro, Jason W
Species: Homo sapiens
Technology: 10x Visium
Spots: 10,796

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The Deciphering of Mouse Uterine Microenvironment during Early Pregnancy

Species: Mus musculus
Technology: 10x visium, scRNA
Spots: 6,753

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Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage

Contributors: Kulasinghe, A K; Tan, C W
Species: Homo sapiens
Technology: GeoMx DSP

Spatiotemporal transcriptomes of orchid flowers

Contributors: Liu, Chang; Leng, Jing; Li, Yonglong; Ge, Tingting; Li, Jinglong; Chen, Yamao; Guo, Chunce; Qi, Ji
Species: Phalaenopsis aphrodite
Technology: 10x Visium
Spots: 8,253

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Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear

Contributors: Ruoss, Severin; Esparza, Mary C; Vasquez-Bolanos, Laura S; Nasamran, Chanond A; Fisch, Kathleen M; Engler, Adam J; Ward, Samuel R
Species: Oryctolagus cuniculus
Technology: 10x Visium
Spots: 6,970

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Spatial gene expression-based, non-small cell lung carcinoma patients with paired brain metastases

Contributors: Abdo, Rober
Species: Homo sapiens
Technology: GeoMx DSP

A cellular hierarchy in melanoma uncouples growth and metastasis

Contributors: Rambow, Florian; Karras, Panagiotis; Pozniak, Joanna
Species: Mus, Homo sapiens, Mus musculus
Technology: 10x visium, scRNA, Stereo-Seq
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