1A spatial transcriptome map of developing maize ear (ID: STDS0000236)

Contributors: Yuebin Wang1,2*, Yun Luo1,2*, Xing Guo3*, Yunfu Li1,2*, Jiali Yan1,2*, Wenwen Shao3, Wenjie Wei1, Da
Technology: Stereo-Seq, scRNA
Spots: 53,911

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2Spatial transcriptomics map of the embryonic mouse brain – a tool to explore neurogenesis (ID: STDS0000235)

Contributors: Di Marco B, Vázquez-Marín J, Monyer H, Centanin L, Alfonso J
Technology: 10x Visium
PMID: 37855382
Spots: 19,968

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3SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics (ID: STDS0000234)

Contributors: Chun Gong; Shengkang Li; Leying Wang; Fuxiang Zhao; Shuangsang Fang; Dong Yuan; Zijian Zhao; Qiqi He; Mei Li; Weiqing Liu; Zhaoxun Li; Hongqing Xie; Sha Liao; Ao Chen; Yong Zhang; Yuxiang Li; Xun Xu
Technology: Stereo-Seq
Spots: 2,343

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4Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST] (ID: STDS0000212)

Contributors: Mitamura, Yasutaka; Reiger, Matthias; Kim, Juno; Xiao, Yi; Zhakparov, Damir; Tan, Ge; Rinaldi, Arturo O; Baerenfaller, Katja; Akdis, Mübeccel; Brüggen, Marie-Charlotte; Brunner, Patrick M; Roqueiro, Damian; Traidl-Hoffmann, Claudia; Akdis, Cezmi A
Species: Homo sapiens
Technology: 10x Visium
PMID: 37312623
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5Spatial transcriptomics: The effect of consecutive slices data integration on accurate cell type annotation and clustering (ID: STDS0000224)

Contributors: Mieczkowski, Jakub; Mohammadi, Elyas; Chojnowska, Katarzyna; Bieńkowski, Michał; Kostecka, Anna; Magdalena, Koczkowska; Michał, Żmijewski; Marcin, Jąkalski; Martin, Inglesson; Bradley, Hyman; Natalia,  Filipowicz; Paweł, Olszewski; Hanna, Davies; Justyna, Wierzbicka; Dumanski, Jan; Piotrowski, Arkadiusz
Species: Homo sapiens
Technology: 10x Visium
PMID: 37081484
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6Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics (additional files) (ID: STDS0000214)

Contributors: Mongrain, Valerie; Ballester Roig, Maria Neus; Dufort-Gervais, Julien
Species: Mus musculus
Technology: 10x Visium
PMID: 37143153
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7Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics (ID: STDS0000218)

Contributors: Mongrain, Valerie; Ballester Roig, Maria Neus; Dufort-Gervais, Julien
Species: Mus musculus
Technology: 10x Visium
PMID: 37143153
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8Spatially resolved multi-omics single-cell analyses inform mechanisms of immune-dysfunction in pancreatic cancer (ID: STDS0000225)

Contributors: QIU, MENGJIE; Yousuf, Suhail; von Voithenberg, Lena V; Imbusch, Charles D; Roth, Susanne
Species: Homo sapiens
Technology: 10x Visium
PMID: 37263303
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9Spatial transcriptomics of murine bone marrow megakaryocytes at single-cell resolution (ID: STDS0000228)

Contributors: Billingsley, James M.; Stone, Andrew P; Tilburg, Julia; Scoville, David; Italiano, Joseph E; Billingsley, James M; Machlus, Kellie R
Species: Mus musculus
Technology: GeoMx DSP
PMID: 37255850
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10Spatiotemporal multi-omics decoding of the developing human spinal cord (ID: STDS0000217)

Contributors: Czarnewski, Paulo
Species: Homo sapiens
Technology: 10x Visium
PMID: 37095395
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