Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis
IDSTT0000007(Source: STOmics DB)
STOmics technology:BGI Stereomics Stereo-Seq
Organism(s):
Danio rerio
Data type:Spatial transcriptomics
Sample scope:Monoisolate
Summary:We employed Stereo-seq, a high-definition spatially resolved transcriptomic technology, to dissect the spatiotemporal dynamics of gene expression and regulatory networks in the developing zebrafish embryo. We profiled 91 embryo sections covering six critical time points (3.3, 5.25, 10, 12, 18, 24hpfs) during the first 24 hours of development, obtaining a total of 139,391 spots at cellular size (~100 µm2) with spatial coordinates.
Contributor(s):Chang Liu, Rui Li, Young Li, Xiumei Lin, Kaichen Zhao et al.
Publication(s):
  • Chang Liu, Rui Li, Young Li, Xiumei Lin, Kaichen Zhao et al. Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis.
Submitter:Rui Li,BGI research
Release date:2022-09-28
Updated:2022-12-06
Relations:
CNP0002220
Statistics:
  • Sample: 6
  • Tissue Section: 10
  • Experiment: 4
  • Run: 7
Datasize:1.87TB
Sequencing Data
Spatial Gene Expression
ProjectSampleTissue SectionExperimentRunOrganismPlatformSequencing readsMask file