What is CNGBdb ?

China National GeneBank DataBase (CNGBdb) is a unified platform built for biological big data sharing and application services to the research community. Based on the big data and cloud computing technologies, it provides data services such as archive, analysis, knowledge search, management authorization, and visualization. At present, CNGBdb has integrated large amounts of internal and external molecular data and other information from CNGB, NCBI, EBI, DDBJ, etc., indexed by search, covering 10 data structures. Moreover, CNGBdb correlates living sources, biological samples and bioinformatic data to realize the traceability of comprehensive data.

CNGBdb Data Resources

Based on the internal data source from CNGB and external data source from NCBI, EBI, DDBJ, etc., and following the data standards of international standard alliance such as INSDC, DataCite, GA4GH, GGBN, ACMG, CNGBdb builds data structures covering literature, gene, variation, protein, etc., and provides data sharing and application services such as data archive, query and retrieval, and analysis.

CNGBdb data source

Overview of CNGB

China National GeneBank (CNGB) is one of the key science infrastructures in Shenzhen, approved and funded by the Chinese government. CNGB is committed to supporting public welfare, life science research, innovation and industry development, through effective bioresource conservation, digitalization and utilization.

China National GeneBank (CNGB) is owned by the government and operated independently by BGI-Research under the guidance and supervision of State High-Tech Industrial Innovation Center, Shenzhen (HIIC).

CNGB is a public, non-profit, open, and enabling platform. It facilitates advanced genomics R&D and technology transfer to industrial application, including precision medicine, agriculture, marine sciences and microbial application, towards its mission of making genetic resources "Owned by All, Completed by All and Shared by All".

Three databases throughout

How to cite

To cite CNGBdb, please refer to the following words :

FAIRsharing.org: CNGBdb; China National GeneBank DataBase; DOI:https://doi.org/10.25504/FAIRsharing.9btRvC; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 17 2019 8:56 a.m.

魏晓锋 陈凤珍 游丽金 杨帆 王丽娜 郭学芹 高飞 华聪 谈聪 方林 单日强 曾文君 王博 王韧 徐讯. CNGBdb:国家基因库生命大数据平台[J]. 遗传, doi: 10.16288/j.yczz.20-080.

Acknowledgement

External data in CNGBdb archiving, search, analysis, scientific database and other services are mainly from open databases such as NCBI,EBI,DDBJ,HPO,CHPO,ICGC,TCGA,cBioPortal,Uniprot,MSK-IMPACT,5ExAC,1000Genomes,NIFTY database,WoRMS,NHLBI ESP,NIEHS EGP,HGDP,Phytozome,dbNSFP,EVS,GWAS. We sincerely thank these databases for providing us with a rich source of biological data. We also would like to thank them for their contributions to the bio-data archiving and sharing businesses. CNGBdb has no special use restriction on these public data resources. However, these data may be subject to the terms and conditions of these external databases themselves. Please review the specific terms and conditions of each database before use to ensure compliance with all applicable regulations.

All public data and data services provided by CNGBdb are freely available to all users worldwide.

China National GeneBank