A cellular resolution spatial transcriptomic landscape of the postnatal mouse brain
Dataset ID: STDS0000139
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PMID:35656552
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120,000 Spots
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27,330 Genes
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Summary:
Here we apply Stereo-seq to generate a spatially-resolved transcriptomic description of the postnatal day 7 (P7) murine whole brain sagittal section near the middle line. Our study comprehensively dissected the anatomical regions, gene expression and gene regulatory network patterns and cell type localization at whole brain scale.
Overall design:
The experiment were performed according to the standard protocol of Stereo-seq
Technology:
Stereo-Seq
Platform:
DNBSEQ-T10
Species:
Mus musculus(mm10)
Tissues:
Brain
Cell types:
Fiber tract, Medulla and pons, Blood, LPO, CbXegr, CbXpu, Zona incerta, CbXigr, Meninge, CbWM, Ventricle, CbN, MRN, Superior collicular, Substantia nigra, L1, LHA, Stratum Hipp, L4-R, L2/3, VPrP, L6, L4-C, L5-C, Subiculum, DG, Thalamus, L5-R, SVZ, LPall, CA1, Reticular nucleus, CA2/3, Str-Cau, Pallidum, Str-OT, Str-ACB, AOV, OBs, OBi, SEZ
Development stage:
P7
Citation:
Cheng, Mengnan et al. “A Cellular Resolution Spatial Transcriptomic Landscape of the Medial Structures in Postnatal Mouse Brain.” Frontiers in cell and developmental biology vol. 10 878346. 17 May. 2022, doi:10.3389/fcell.2022.878346
Submission date: 2022-02-16Update date: 2022-02-16
Sample number: 1Section number: 2
Contributors
Mengnan cheng; Liang Wu; Chuanyu Liu; Longqi Liu
Contact: wuliang2@genomics.cn