Germplasm Database Construction Service Provider: Trinity system integrated with Germplasm Resources---DNA Samples Bank---Gene Batabase
The China National GeneBank(CNGB) is a national-level scientific research support platform that provides services for life science research and the innovative development of the biological industry. Benefiting from CNGB's long and rich experience about infrastructure building and operation management in the field of biological resource construction, it can provide agricultural research institutions and enterprises with all-in-one solutions integrated germplasm----DNA---gene data database construction, from top-level design, technical solutions, server selection, resource library promotion, to personnel training.
Plant Resource Bank in CNGB
BiosalineDB:Biosaline DataBase
Biosaline DataBase is a comprehensive database of information related to the research and utilization of biosaline. It mainly contains the halophyte resources, genomic information and literature about the saline tolerance in plant.Among them, the sub-library of the BiosalineDB: Tidal Flat Plant Resource Database, which contains a total of 165 wild tidal flat plants, and highlights their morphology, distribution, characteristics, uses, and reproduction methods. At the same time, each species is equipped with There are photos of form, habitat, application, etc. Users can use the Chinese or Latin names to quickly obtain comprehensive information about tidal flat plants through the resource library search box.
MilletDB:Millet DataBase
The MilletDB is designed based on the millet genome research project involved BGI Research, Zhangjiakou Academy of Agricultural Sciences and other units. The database integrates the phenotype and genotype of millet in an innovative way, and can query and retrieve the millet genotype through the phenotype information and vice-versa(retrieve the millet phenotype through the genotype). Another feature of the MilletDB is the biological Big Data Technology using , with more than 2000 millet materials information, 40 millet phenotype information records, using machine learning methods (including K-nearest neighbor , random forest and support vector machine, etc.) to model the above-mentioned genotype and phenotype data. The model finally realizes the prediction of the millet phenotype from the genotype, which contributes to intelligent molecular breeding.
WGVD: Wheat Genome Variation Database and Selective Signatures
The Northwest Agriculture and Forestry University Wheat Variation Database is deployed as a mirror database in CNGBdb. It contains data for resequencing and exon sequencing of 968 wheat germplasm. Variations include 7,353,314 SNPs and 1,044,400 indels, and provides statistics of wheat population selection signals. (Pi and FST) and display.
10KP: 10,000 Plant Genomes Project
The 10,000 plants (tenKP or 10KP) aims to sequence over 10,000 genomes representing every major clade of plants and eukaryotic microbes(nearly the entire plant kingdom) through extensive global collaboration, comprehensive resource collection, and systematic scientific design and research. This project would generate large-scale plant genome data within the next five years (2017-2022), addressing fundamental questions about biodiversity, plant evolution, ecological protection.
Animal and Plant Resource Datamart in CNGB
The "Data Resources→Datamart→Plants" section of CNGBdb also has a variety of crop/model plants genomic datasets, such as "the 3000 Rice Genomes dataset, corn genome dataset, cotton genome dataset", for more agricultural genetic resources data, please visit https://db.cngb.org/datamart/plant/.