Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma(Dataset ID: STDS0000152)

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796
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2,162
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Spots: 4,602
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Genes: 17,943
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PMID: 36153593
Summary
Visualization
Data
Analysis results
Related
Sample
Catalog
Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
Single-cell transcriptomic atlas of leukocytes of biopsy fluid (n = 2), blood (n = 2) and CSF (n = 1), and spatial transcriptomics of biopsy tissue (n = 4) from primary CNS B cell lymphoma patients.
Overall design:
Single-cell RNA and BCR sequencing of paired biopsy fluid and blood and spatial transcriptomics in primary CNS lymphoma.
Technology:
10x Visium
Platform:
Illumina NovaSeq 6000 (Homo sapiens), NextSeq 2000 (Homo sapiens)
Species:
Homo sapiens(hg38)
Tissues:
Lymph
Organ parts:
lymphoma
Disease:
CNS lymphoma
Submission date: 2022-05-22Update date: 2022-09-25
Sample number: 13Section number: 4
DOI: To be continue
Contributors
Heming, Michael,Lu, I-Na,Grauer, Oliver,Meyer zu Hörste G
Accessions
GEO Series Accessions: GSE203552
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Heming, Michael,Lu, I-Na,Grauer, Oliver,Meyer zu Hörste G. Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma[DS/OL]. STOmicsDB, 2022[2022-05-22]. https://db.cngb.org/stomics/datasets/STDS0000152/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Heming, Michael et al. “Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma.” Genome medicine vol. 14,1 109. 24 Sep. 2022, doi:10.1186/s13073-022-01110-1