Clump sequencing exposes the spatial expression programs of intestinal secretory cells
Summary:We molecularly characterized Clumps and single cells from Jejunum. This enable us to uncover the zonation of rare secretory cells on crypt to villus axis.
Overall design:mRNA profiles from clumps and single cells, EDTA isolated jejunum epithelial clumps and single cells were sequenced in several batches in an Illumina NextSeq.
3 months, 4 months
Citation:Manco, Rita et al. “Clump sequencing exposes the spatial expression programs of intestinal secretory cells.” Nature communications vol. 12,1 3074. 24 May. 2021, doi:10.1038/s41467-021-23245-2
Submission date: 2020-07-20Update date: 2021-06-15
Rita Manco; Inna Averbukh; Keren B Halpern; Porat Ziv; Ido Amit; Shalev Itzkovitz
AccessionsGEO Series Accessions: GSE154714