Clump sequencing exposes the spatial expression programs of intestinal secretory cells(Dataset ID: STDS0000094)

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PMID: 34031373
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Dataset information
Summary:
We molecularly characterized Clumps and single cells from Jejunum. This enable us to uncover the zonation of rare secretory cells on crypt to villus axis.
Overall design:
mRNA profiles from clumps and single cells, EDTA isolated jejunum epithelial clumps and single cells were sequenced in several batches in an Illumina NextSeq.
Technology:
ClumpSeq
Platform:
GPL21626
Species:
Mus musculus(mm10)
Development stage:
3 months, 4 months
Submission date: 2020-07-20Update date: 2021-06-15
Contributors
Rita Manco; Inna Averbukh; Keren B Halpern; Porat Ziv; Ido Amit; Shalev Itzkovitz
Accessions
GEO Series Accessions: GSE154714
Reference way
Citation: Manco, Rita et al. “Clump sequencing exposes the spatial expression programs of intestinal secretory cells.” Nature communications vol. 12,1 3074. 24 May. 2021, doi:10.1038/s41467-021-23245-2