Spatially mapped single-cell chromatin accessibility(Dataset ID: STDS0000078)

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272
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Genes: 134,729
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PMID: 33627658
Summary
Visualization
Data
Analysis results
Related
Sample
Catalog
Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
sciMAP-ATAC as a technology to produce single-cell ATAC-seq data with cells mapped to spatially-defined regions.
Overall design:
Single-cell ATAC-seq data including sci-ATAC-seq and sciMAP-ATAC-seq.
Technology:
sci-ATAC-seq,sciMAP-ATAC-seq
Platform:
GPL18573, GPL19057
Species:
Homo sapiens(hg38)
Mus musculus(mm10)
Tissues:
Cortex
Organ parts:
Human cortex
Submission date: 2021-01-14Update date: 2021-03-16
DOI: To be continue
Contributors
Andrew C Adey,Casey A Thornton
Contact: adey@ohsu.edu
Accessions
GEO Series Accessions: GSE164849
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Andrew C Adey,Casey A Thornton. Spatially mapped single-cell chromatin accessibility[DS/OL]. STOmicsDB, 2021[2021-01-14]. https://db.cngb.org/stomics/datasets/STDS0000078/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Thornton, Casey A et al. “Spatially mapped single-cell chromatin accessibility.” Nature communications vol. 12,1 1274. 24 Feb. 2021, doi:10.1038/s41467-021-21515-7