Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.(Dataset ID: STDS0000071)

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Spots: 1,027,848
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Genes: 161
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PMID: 30385464
Summary
Visualization
Data
Analysis results
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Dataset information
Summary:
The hypothalamus controls essential social behaviors and homeostatic functions. However, the cellular architecture of hypothalamic nuclei, including the molecular identity, spatial organization, and function of distinct cell types, is poorly understood. Here, we developed an imaging-based cell type identification and mapping method and combined it with single-cell RNA-sequencing to create a molecularly annotated and spatially resolved cell atlas of the mouse hypothalamic preoptic region. We profiled ~1 million cells, identified ~70 neuronal populations characterized by distinct neuromodulatory signatures and spatial organizations, and defined specific neuronal populations activated during key social behaviors in male and female mice, providing a high-resolution framework for mechanistic investigation of behavior circuits. The approach described here opens a new avenue for the construction of cell atlases in diverse tissues and organisms.
Technology:
MERFISH
Species:
Mus musculus(mm10)
Tissues:
Brain
Submission date: 2018-11-03Update date: 2018-11-03
DOI: To be continue
Contributors
Zhuang X,Dulac C
Contact: zhuang@chemistry.harvard.edu
Accessions
Datas Source: https://datadryad.org/stash/dataset/doi:10.5061/dryad.8t8s248
scRNA seq GEO Series Accessions: GSE113576
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Zhuang X,Dulac C. Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.[DS/OL]. STOmicsDB, 2018[2018-11-03]. https://db.cngb.org/stomics/datasets/STDS0000071/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Moffitt, Jeffrey R et al. “Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.” Science (New York, N.Y.) vol. 362,6416 (2018): eaau5324. doi:10.1126/science.aau5324