Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta(Dataset ID: STDS0000070)

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PMID: 32457985
Summary
Visualization
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Analysis results
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Dataset information
Summary:
Spatial transcriptomics by RNA-tomography (Tomo-seq) on whole or sub-dissected embryos (processed along the anterior-to-posterior axis) and on transversal thick slices (processed along the dorsal-to-ventral axis). 2019-03-15
Technology:
Tomo-seq
Platform:
Illumina HiSeq 2500, Illumina NextSeq 500
Species:
Danio rerio(Zv9)
Gallus gallus(galGal4)
Homo sapiens(hg19)
Mus musculus(mm10)
Tissues:
Embryo
Development stage:
3 days,4 days
Submission date: 2019-03-15Update date: 2020-09-07
DOI: To be continue
Contributors
Laurent Yvernogeau,Ismaël Morin-Poulard,Anna Klaus,Joris Maas,Stefan Schulte-Merker,Eugene Berezikov
Contact: c.robin@hubrecht.eu
Accessions
GEO Series Accessions: GSE128350
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Laurent Yvernogeau,Ismaël Morin-Poulard,Anna Klaus,Joris Maas,Stefan Schulte-Merker,Eugene Berezikov. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta[DS/OL]. STOmicsDB, 2019[2019-03-15]. https://db.cngb.org/stomics/datasets/STDS0000070/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Yvernogeau, Laurent et al. “Multispecies RNA tomography reveals regulators of hematopoietic stem cell birth in the embryonic aorta.” Blood vol. 136,7 (2020): 831-844. doi:10.1182/blood.2019004446