Vitamin D sufficiency enhances differentiation of patient-derived prostate epithelial organoids(Dataset ID: STDS0000011)

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417
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694
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Spots: 653
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Genes: 36,648
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PMID: 33458620 (IF:5.8 Q1)
Summary
Visualization
Data
Analysis results
Related
Sample
Catalog
Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
Spatially resolved gene expression was prepard by dissociated hman prostate tissue to single cells, and collected & prepped for RNA-seq using the Visium Spatial Gene Expression kit. 5000 cells were collected and sequenced at a depth of 50k cells/gene on a 2X150nt lane in a NovaSeq 6000. SpaceRanger alignment was performed to produce the RAW files
Overall design:
Two samples:ETOH, 25D
Technology:
10x Visium,scRNA
Platform:
Illumina NovaSeq 6000
Species:
Homo sapiens(hg38)
Tissues:
Prostate
Organ parts:
Prostate epithelial organoids
Cell types:
stem cell,dividing cells,The “IntegrinHigh”,progenitor,luminal
Submission date: 2020-10-20Update date: 2021-06-19
Sample number: 2Section number: 2
DOI: To be continue
Contributors
Garcia J,Loitz C,Nonn L
Contact: lnonn@uic.edu
Accessions
GEO Series Accessions: GSE159697
Release scRNA GEO Series Accessions: GSE142489
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Garcia J,Loitz C,Nonn L. Vitamin D sufficiency enhances differentiation of patient-derived prostate epithelial organoids[DS/OL]. STOmicsDB, 2020[2020-10-20]. https://db.cngb.org/stomics/datasets/STDS0000011/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: McCray, Tara et al. “Vitamin D sufficiency enhances differentiation of patient-derived prostate epithelial organoids.” iScience vol. 24,1 101974. 5 Jan. 2021, doi:10.1016/j.isci.2020.101974