A coordinated progression of progenitor cell states initiates urinary tract development(Dataset ID: STDS0000006)

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Spots: 2,385
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Genes: 27,998
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PMID: 33976190
Summary
Visualization
Data
Analysis results
Related
Sample
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Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
To study cell heterogeneity and state transitions in the developing urinary tract we performed spatial transcriptomics from the trunk of E9.5 Pax2GFP mouse embryos using the 10x Genomics Visium Spatial Gene Expression protocol
Overall design:
Identify cell heterogenity and state transitions in the developing urinary tract
Technology:
10x Visium,scRNA
Platform:
Illumina NovaSeq 6000
Species:
Mus musculus(mm10)
Tissues:
Embryo
Organ parts:
Trunk
Disease:
E9.5 Pax2GFP Mus musculus embryos
Submission date: 2020-10-26Update date: 2021-05-18
Sample number: 9Section number: 4
DOI: To be continue
Contributors
SanchezFerras O,Pacis A,Sotiropoulou M,Zhang Y,Wang YC,Bourgey M,Bourque G,Ragoussis I,Bouchard M
Contact: alain.pacis@mcgill.ca
Accessions
GEO Series Accessions: GSE160137
Release scRNA GEO Series Accessions: GSE143806
Release scRNA GEO Series Accessions: GSE160136
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] SanchezFerras O,Pacis A,Sotiropoulou M,Zhang Y,Wang YC,Bourgey M,Bourque G,Ragoussis I,Bouchard M. A coordinated progression of progenitor cell states initiates urinary tract development[DS/OL]. STOmicsDB, 2020[2020-10-26]. https://db.cngb.org/stomics/datasets/STDS0000006/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Sanchez-Ferras, Oraly et al. “A coordinated progression of progenitor cell states initiates urinary tract development.” Nature communications vol. 12,1 2627. 11 May. 2021, doi:10.1038/s41467-021-22931-5