STOmicsDB data archive system is a comprehensive repository that collects spatial transcriptomic data through user submission. STOmicsDB data archive system accepts spatial transcriptomic data from raw sequencing data, and image information for the analysis of the results, which enhances the reproducibility of spatial transcriptomic data. Additionally, STOmicsDB provides visualization of archived data to facilitate new data analysis.

The standard for STOmics data archiving will help you understand what data has to be submitted.

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① Projects
② Sample
Tissue SectionMetadata & Image
③ Tissue Section
Sequencing readsFastq
④ Sequencing reads
STOmics Datasets
⑧ STOmics Datasets
Cell annotation.tsv / .txt / .csv
⑦ Cell annotation
Spatial position.h5 / .bin / .csv
⑥ Spatial position
Gene Expression Matrices.h5 / .gem / .gef / .tsv / …
⑤ Gene Expression Matrices