STOmicsDB data archive system is a comprehensive repository that collects spatial transcriptomic data through user submission. STOmicsDB data archive system accepts spatial transcriptomic data from raw sequencing data, image information to analysis results, which enhances the spatial transcriptomic data reproducibility. Additionally, STOmicsDB provides visualization of archived data to facilitate new data analysis.

The standard for STOmics data archiving will get you started in understanding what data need to be submitted.

If you need any help, please contact [email protected].

Metadata

① Project

Metadata

② Sample

Metadata & Image

③ Tissue Section

Fastq

④ Sequencing reads

⑧ STOmics Datasets

.tsv / .txt / .csv

⑦ Cell annotation

.h5 / .bin / .csv

⑥ Spatial position

.h5 / .gem / .gef / .tsv / …

⑤ Gene Expression Matrices