Submission
STOmicsDB data archive system is a comprehensive repository that collects spatial transcriptomic data through user submission. STOmicsDB data archive system accepts spatial transcriptomic data from raw sequencing data, and image information for the analysis of the results, which enhances the reproducibility of spatial transcriptomic data. Additionally, STOmicsDB provides visualization of archived data to facilitate new data analysis.
The standard for STOmics data archiving will help you understand what data has to be submitted.
If you need any help, please contact datasubs@cngb.org.
Metadata
① Project
Metadata
② Sample
Metadata & Image
③ Tissue Section
Fastq
④ Sequencing reads
⑧ STOmics Datasets
.tsv / .txt / .csv
⑦ Cell annotation
.h5 / .bin / .csv
⑥ Spatial position
.h5 / .gem / .gef / .tsv / …
⑤ Gene Expression Matrices