The Spatial Transcriptomics of upland rice root
IDSTT0000026(Source: STOmics DB)
STOmics technology:BGI Stereomics Stereo-Seq
Organism(s):
Data type:Spatial transcriptomics
Sample scope:Monoisolate
Summary:Upland rice and irrigated rice have different root patterning adapted to rainfall or irrigated conditions, respectively. Due to the increasing scarcity of water for irrigation, it is necessary to study the mechanism of root patterning in upland rice. Here we investigated the fine difference in root between these two ecotypes and found that upland rice have less crown root (CR), longer meristem and more cortex in root tip than irrigated rice. We used a high-resolution spatial transcriptomics technology, Stereo-seq, to dissect the transcriptional differences in the CR-producing coleoptile and root tips.
Contributor(s):Li-Yuan Zhong, Le-Ping Geng, Yi-Meng Xiang, Le Cao, Yu Zhao et al.
Publication(s):
- Li-Yuan Zhong, Le-Ping Geng, Yi-Meng Xiang, Le Cao, Yu Zhao et al. The adaptation of upland rice roots dissected by spatial transcriptomics.
Submitter:Zhong Liyuan,BGI
Release date:2025-03-28
Updated:2025-03-28
Statistics:
- Sample: 7
- Tissue Section: 80
Datasize:27.12GB
chevron_leftchevron_right
| Project | Sample | Tissue Section | Organism | Files |
|---|