In situ tissue profile of rat trigeminal nerve in trigeminal neuralgia using spatial transcriptome sequencing(Dataset ID: STDS0000298)

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Genes: 32,623
Summary
Visualization
Data
Analysis results
Sample
Catalog
Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
Investigation on the transcriptome and intercellular communication of different cells of trigeminal nerve in trigeminal neuralgia rat by spatial transcriptome sequencing
Overall design:
Unilateral mechanical compression-induced TN rat model was prepared. The trigeminal root, semilunar ganglion and proximal branches from the diseased side of three individual were isolated and squeezed into the first three capture areas (trigeminal neuralgia, TN1, 2, 3), whereas the healthy side from two of three individual were put into the final capture area (healthy control, HC) of Visium Spatial Gene Expression Slide.
Technology:
ST
Platform:
Illumina NovaSeq 6000
Species:
Rattus norvegicus
Tissues:
trigeminal neuralgia
Submission date: 2023-05-31Update date: 2024-02-29
Sample number: 1Section number: 1
DOI: To be continue
Contributors
wei, wenbin; Liu, Yuemin
Contact: contrib1
Accessions
GEO Series Accessions: GSE233838
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] wei, wenbin. In situ tissue profile of rat trigeminal nerve in trigeminal neuralgia using spatial transcriptome sequencing[DS/OL]. STOmicsDB, 2023[2023-05-31]. https://db.cngb.org/stomics/datasets/STDS0000298/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    No results.