Spatiotemporal transcriptomes of orchid flowers(Dataset ID: STDS0000149)

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1,205
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848
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Spots: 8,253
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Genes: 28,903
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PMID: 36095130
Summary
Visualization
Data
Analysis results
Related
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Catalog
Dataset information
Contributors
Accessions
How to cite
Dataset information
Summary:
We performed spatial transcriptome sequencing of orchid to provide spatial cell atlas of floral organogenesis.
Overall design:
Phalaenopsis Big Chili flowers at early developing stages sequenced on 10X Visium platform
Technology:
10x Visium
Platform:
Illumina NovaSeq 6000 (Phalaenopsis aphrodite)
Species:
Phalaenopsis aphrodite(ASM301322v1)
Tissues:
Flower
Organ parts:
Sagittal section
Development stage:
8 days after budding
Submission date: 2022-03-08Update date: 2022-10-24
Sample number: 3Section number: 3
DOI: To be continue
Contributors
Liu, Chang,Leng, Jing,Li, Yonglong,Ge, Tingting,Li, Jinglong,Chen, Yamao,Guo, Chunce,Qi, Ji
Accessions
GEO Series Accessions: GSE198128
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] Liu, Chang,Leng, Jing,Li, Yonglong,Ge, Tingting,Li, Jinglong,Chen, Yamao,Guo, Chunce,Qi, Ji. Spatiotemporal transcriptomes of orchid flowers[DS/OL]. STOmicsDB, 2022[2022-03-08]. https://db.cngb.org/stomics/datasets/STDS0000149/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    Citation: Liu, Chang et al. “A spatiotemporal atlas of organogenesis in the development of orchid flowers.” Nucleic acids research vol. 50,17 (2022): 9724-9737. doi:10.1093/nar/gkac773