Adult Mouse Brain (FFPE)(Dataset ID: STDS0000052)

0
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1,770
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444
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Spots: 2,264
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Genes: 19,465
Summary
Visualization
Data
Analysis results
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Dataset information
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Accessions
How to cite
Dataset information
Summary:
5µm section from Mus musculus brain. FFPE tissue purchased from Adlego and embedded by BioIVT. Sex: Male Age: >8 weeks Strain: C57BL/6 Section Orientation: Coronal Libraries were prepared following the Visium Spatial Gene Expression Reagent Kits for FFPE User Guide (CG000407 Rev A). Sequenced on an Illumina NovaSeq with approximately 28,826 reads per spot with dualindex set SITSB7, 28bp read 1 (16bp Visium spatial barcode, 12bp UMI), 120bp read2 (transcript), 10bp i7 sample barcode and 10bp i5 sample barcode. 2,264 spots detected under tissue.
Technology:
10x Visium
Species:
Mus musculus(mm10)
Tissues:
Brain
Development stage:
>8 weeks
Sex:
Male
Submission date: 2021-08-16Update date: 2021-08-16
Sample number: 1Section number: 1
DOI: To be continue
Contributors
No results.
Accessions
10x visium data: 10x GENOMICS
How to cite
  • Cite database of STOmicsDB:
    [1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
  • Cite visualization dataset:
    [2] xxxxxx. Adult Mouse Brain (FFPE)[DS/OL]. STOmicsDB, 2021[2021-08-16]. https://db.cngb.org/stomics/datasets/STDS0000052/. doi: xxxxxx
    #Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
  • Cite original data article:
    No results.