Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis(Dataset ID: STDS0000003)
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Dataset information
Contributors
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How to cite
Dataset information
Summary:
Spatially-resolved RNA-seq with high-throughput time-course scRNA-seq to study the gene expression, interactions, and regulatory programs that drive fetal development of the chicken hearts.Overall design:
Spatially-resolved RNA-seq with high-throughput time-course scRNA-seq to study the gene expression, interactions, and regulatory programs that drive fetal development of the chicken hearts.Technology:
10x Visium,scRNA
Platform:
Illumina NextSeq 500
Species:
Gallus gallus(galGal6)
Tissues:
Embryo
Organ parts:
Heart
Cell types:
C2,C3
Development stage:
HH21-HH24,HH30-HH31,HH35-HH36,HH40
Submission date: 2020-04-27Update date: 2020-05-06
Sample number: 11Section number: 11
DOI: To be continue
Contributors
Mantri M,Scuderi GJ,Nassab RA,Butcher JT,De Vlaminck I
Contact: id93@cornell.edu
Accessions
GEO Series Accessions:
GSE149457
10x visium data: https://github.com/madhavmantri/chicken_heart
How to cite
- Cite database of STOmicsDB:[1] Xu, Zhicheng et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic acids research vol. 52,D1 (2024): D1053-D1061. doi: 10.1093/nar/gkad933'
- Cite visualization dataset:[2] Mantri M,Scuderi GJ,Nassab RA,Butcher JT,De Vlaminck I. Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis[DS/OL]. STOmicsDB, 2020[2020-04-27]. https://db.cngb.org/stomics/datasets/STDS0000003/. doi: xxxxxx#Format: {contributors}. {title}[DS/OL]. STOmicsDB, {the year of submission data}[{submission data}]. {dataset link}. doi: {doi ID}
- Cite original data article:Citation: Mantri, Madhav et al. “Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis.” Nature communications vol. 12,1 1771. 19 Mar. 2021, doi:10.1038/s41467-021-21892-z