Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis
Dataset ID: STDS0000003
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PMID:33741943
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6,596 Spots
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24,356 Genes
Catalog
Dataset information
Contributors
Accessions
Dataset information
Summary:
Spatially-resolved RNA-seq with high-throughput time-course scRNA-seq to study the gene expression, interactions, and regulatory programs that drive fetal development of the chicken hearts.
Overall design:
Spatially-resolved RNA-seq with high-throughput time-course scRNA-seq to study the gene expression, interactions, and regulatory programs that drive fetal development of the chicken hearts.
Technology:
10x Visium, scRNA
Platform:
Illumina NextSeq 500
Species:
Gallus gallus(galGal6)
Tissues:
Embryo
Organ parts:
Heart
Cell types:
C2, C3
Development stage:
HH21-HH24, HH30-HH31, HH35-HH36, HH40
Citation:
Mantri, Madhav et al. “Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis.” Nature communications vol. 12,1 1771. 19 Mar. 2021, doi:10.1038/s41467-021-21892-z
Submission date: 2020-04-27Update date: 2020-05-06
Sample number: 11Section number: 11
Contributors
Mantri M; Scuderi GJ; Nassab RA; Butcher JT; De Vlaminck I
Contact: id93@cornell.edu
Accessions
GEO Series Accessions: GSE149457
10x visium data: https://github.com/madhavmantri/chicken_heart