ICRM: integrated reference catalog of the global citrus root-associated microbiome
The plant root and associated microbiome system, which is functionally analogous to the animal gut and associated microbiome, plays important roles in biogeochemical cycles and promoting plant growth and health. Present here is a large-scale gene catalog of the root-associated microbiome of citrus, via deep metagenome sequencing with samples collected from six continents across distinct biogeographic conditions, including China, Australia, France, Italy, Spain, South Africa, U.S.A. and Brazil. More than 183 million unigenes, 59% of which could not be annotated based on current databases, were archived from our data. You are welcomed to search for the microbial genes or download the data.
Data download
1. Gene set
Please click to download the gene set files.
2. Gene annotation
Please click to download the gene annotation results.
3. Code availability
Please click to download the scripts to generate the main figures in the paper.
Statistics
1. Gene set summary
| #ORFs | 183504742(183M) |
|---|---|
| Total length (bp) | 89189301456bp(89G) |
| Average length (bp) | 486bp |
| Max length(bp) | 33900 |
| Min length(bp) | 150 |
| % annotated on Phylum level | 36.09 |
| % annotated on Genus level | 21.77 |
| % annotated on KO | 54.18 |
| % annotated on eggNOG | 78.88 |
2. Comparison with Human Gut and Tara Ocean Genesets
3. Phylum composition
4. KEGG summary
Partners
