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Sample information

Raw gene count sparse matrices

Metadata

Processed datasets

Differentially expressed gene lists

Sampled data

Sample information (47 files)

Table of tissue, sample, data quality and cell number information. Download all

File name	Size
ALL_Tissue_Global_Clustering_infor.txt.gz	11K
ALL_Tissue_Sample.txt.gz	7.4K
Sample_infor_Abdominal_wall.txt.gz	1.5K
Sample_infor_Adrenal_gland.txt.gz	1.3K
Sample_infor_Aorta.txt.gz	712B
Sample_infor_Bladder.txt.gz	1.2K
Sample_infor_Bone_marrow.txt.gz	1.6K
Sample_infor_Bronchus.txt.gz	1.4K
Sample_infor_Carotid.txt.gz	1.2K
Sample_infor_Cerebellum.txt.gz	931B
Sample_infor_Colon.txt.gz	1.5K
Sample_infor_Diaphragm.txt.gz	1.2K
Sample_infor_Duodenum.txt.gz	1.3K
Sample_infor_Epididymis.txt.gz	1.1K
Sample_infor_Esophagus.txt.gz	1.2K
Sample_infor_Fallopian_tube.txt.gz	1.1K
Sample_infor_Gallbladder.txt.gz	886B
Sample_infor_Heart.txt.gz	623B
Sample_infor_Kidney.txt.gz	1.5K
Sample_infor_Liver.txt.gz	1.1K
Sample_infor_Lung.txt.gz	1.5K
Sample_infor_Lymph_node.txt.gz	1.2K
Sample_infor_Neocortex.txt.gz	1.4K
Sample_infor_Ovary.txt.gz	1.4K
Sample_infor_Pancreas.txt.gz	984B
Sample_infor_PBMC.txt.gz	939B
Sample_infor_Pigmentary_epi.txt.gz	890B
Sample_infor_Pineal_gland.txt.gz	1.0K
Sample_infor_Pituitary_gland.txt.gz	1.3K
Sample_infor_Prostate.txt.gz	1.3K
Sample_infor_Retina.txt.gz	1.2K
Sample_infor_Salivary_gland.txt.gz	1.3K
Sample_infor_Skin.txt.gz	1.5K
Sample_infor_Spermaduct.txt.gz	1.1K
Sample_infor_Spinal_cord.txt.gz	992B
Sample_infor_Spleen.txt.gz	1.1K
Sample_infor_Stomach.txt.gz	1.8K
Sample_infor_Subcutaneous_adipose.txt.gz	1.1K
Sample_infor_Substantia_nigra.txt.gz	1.3K
Sample_infor_Testis.txt.gz	967B
Sample_infor_Thyroid_gland.txt.gz	812B
Sample_infor_Tongue.txt.gz	1.6K
Sample_infor_Tonsil.txt.gz	1.6K
Sample_infor_Trachea.txt.gz	1.1K
Sample_infor_Uterus.txt.gz	1.5K
Sample_infor_Vagina.txt.gz	774B
Sample_infor_Visceral_adipose.txt.gz	1.8K

Raw gene count sparse matrices (45 files)

Sparse gene (row) by cell (column) matrices of 45 tissues. Download all

File name	Size
Matrix_Abdominal_wall.txt.gz	1.1G
Matrix_Adrenal_gland.txt.gz	2.5G
Matrix_Aorta.txt.gz	230M
Matrix_Bladder.txt.gz	1.1G
Matrix_Bone_marrow.txt.gz	219M
Matrix_Bronchus.txt.gz	472M
Matrix_Carotid.txt.gz	691M
Matrix_Cerebellum.txt.gz	4.7G
Matrix_Colon.txt.gz	370M
Matrix_Diaphragm.txt.gz	1.4G
Matrix_Duodenum.txt.gz	140M
Matrix_Epididymis.txt.gz	2.6G
Matrix_Esophagus.txt.gz	514M
Matrix_Fallopian_tube.txt.gz	1.7G
Matrix_Gallbladder.txt.gz	1.6G
Matrix_Heart.txt.gz	350M
Matrix_Kidney.txt.gz	3.3G
Matrix_Liver.txt.gz	4.7G
Matrix_Lung.txt.gz	1.9G
Matrix_Lymph_node.txt.gz	279M
Matrix_Neocortex.txt.gz	3.8G
Matrix_Ovary.txt.gz	1.6G
Matrix_Pancreas.txt.gz	2.5G
Matrix_PBMC.txt.gz	705M
Matrix_Pigmentary_epi.txt.gz	620M
Matrix_Pineal_gland.txt.gz	869M
Matrix_Pituitary_gland.txt.gz	2.1G
Matrix_Prostate.txt.gz	2.6G
Matrix_Retina.txt.gz	631M
Matrix_Salivary_gland.txt.gz	3.8G
Matrix_Skin.txt.gz	1.1G
Matrix_Spermaduct.txt.gz	1.1G
Matrix_Spinal_cord.txt.gz	272M
Matrix_Spleen.txt.gz	392M
Matrix_Stomach.txt.gz	266M
Matrix_Subcutaneous_adipose.txt.gz	911M
Matrix_Substantia_nigra.txt.gz	742M
Matrix_Testis.txt.gz	263M
Matrix_Thyroid_gland.txt.gz	557M
Matrix_Tongue.txt.gz	1.4G
Matrix_Tonsil.txt.gz	452M
Matrix_Trachea.txt.gz	272M
Matrix_Uterus.txt.gz	3.0G
Matrix_Vagina.txt.gz	131M
Matrix_Visceral_adipose.txt.gz	4.0G

Metadata (46 files)

Metadata files for global clustering and individual tissue. Download all

File name	Size
Metadata_ALL_Tissue_Global_Clustering.txt.gz	136M
Metadata_Abdominal_wall.txt.gz	2.7M
Metadata_Adrenal_gland.txt.gz	5.5M
Metadata_Aorta.txt.gz	444K
Metadata_Bladder.txt.gz	2.2M
Metadata_Bone_marrow.txt.gz	586K
Metadata_Bronchus.txt.gz	1.1M
Metadata_Carotid.txt.gz	1.3M
Metadata_Cerebellum.txt.gz	9.8M
Metadata_Colon.txt.gz	905K
Metadata_Diaphragm.txt.gz	3.1M
Metadata_Duodenum.txt.gz	320K
Metadata_Epididymis.txt.gz	6.0M
Metadata_Esophagus.txt.gz	1.3M
Metadata_Fallopian_tube.txt.gz	3.6M
Metadata_Gallbladder.txt.gz	3.1M
Metadata_Heart.txt.gz	700K
Metadata_Kidney.txt.gz	6.6M
Metadata_Liver.txt.gz	9.5M
Metadata_Lung.txt.gz	4.2M
Metadata_Lymph_node.txt.gz	830K
Metadata_Neocortex.txt.gz	6.3M
Metadata_Ovary.txt.gz	2.8M
Metadata_Pancreas.txt.gz	4.3M
Metadata_PBMC.txt.gz	2.0M
Metadata_Pigmentary_epi.txt.gz	1.7M
Metadata_Pineal_gland.txt.gz	1.9M
Metadata_Pituitary_gland.txt.gz	5.4M
Metadata_Prostate.txt.gz	7.1M
Metadata_Retina.txt.gz	1.1M
Metadata_Salivary_gland.txt.gz	9.1M
Metadata_Skin.txt.gz	2.1M
Metadata_Spermaduct.txt.gz	2.7M
Metadata_Spinal_cord.txt.gz	707K
Metadata_Spleen.txt.gz	934K
Metadata_Stomach.txt.gz	616K
Metadata_Subcutaneous_adipose.txt.gz	2.6M
Metadata_Substantia_nigra.txt.gz	2.1M
Metadata_Testis.txt.gz	600K
Metadata_Thyroid_gland.txt.gz	1.1M
Metadata_Tongue.txt.gz	3.2M
Metadata_Tonsil.txt.gz	1.1M
Metadata_Trachea.txt.gz	519K
Metadata_Uterus.txt.gz	6.4M
Metadata_Vagina.txt.gz	304K
Metadata_Visceral_adipose.txt.gz	9.0M

Processed datasets (46 files)

H5ad file for global clustering with Scanpy. Rds file for individual tissue clustering with Seurat. Download all

File name	Size
ALL_Tissue_Global_Clustering_Scanpy.h5ad	23G
Seurat4.0_Abdominal_wall.rds	878M
Seurat4.0_Adrenal_gland.rds	2.4G
Seurat4.0_Aorta.rds	181M
Seurat4.0_Bladder.rds	1.1G
Seurat4.0_Bone_marrow.rds	240M
Seurat4.0_Bronchus.rds	462M
Seurat4.0_Carotid.rds	612M
Seurat4.0_Cerebellum.rds	4.4G
Seurat4.0_Colon.rds	292M
Seurat4.0_Diaphragm.rds	1.3G
Seurat4.0_Duodenum.rds	73M
Seurat4.0_Epididymis.rds	2.5G
Seurat4.0_Esophagus.rds	412M
Seurat4.0_Fallopian_tube.rds	1.6G
Seurat4.0_Gallbladder.rds	1.6G
Seurat4.0_Heart.rds	338M
Seurat4.0_Kidney.rds	2.8G
Seurat4.0_Liver.rds	4.5G
Seurat4.0_Lung.rds	1.8G
Seurat4.0_Lymph_node.rds	264M
Seurat4.0_Neocortex.rds	3.8G
Seurat4.0_Ovary.rds	1.6G
Seurat4.0_Pancreas.rds	2.5G
Seurat4.0_PBMC.rds	773M
Seurat4.0_Pigmentary_epi.rds	550M
Seurat4.0_Pineal_gland.rds	704M
Seurat4.0_Pituitary_gland.rds	2.0G
Seurat4.0_Prostate.rds	2.3G
Seurat4.0_Retina.rds	612M
Seurat4.0_Salivary_gland.rds	3.6G
Seurat4.0_Skin.rds	746M
Seurat4.0_Spermaduct.rds	921M
Seurat4.0_Spinal_cord.rds	179M
Seurat4.0_Spleen.rds	357M
Seurat4.0_Stomach.rds	182M
Seurat4.0_Subcutaneous_adipose.rds	850M
Seurat4.0_Substantia_nigra.rds	574M
Seurat4.0_Testis.rds	191M
Seurat4.0_Thyroid_gland.rds	479M
Seurat4.0_Tongue.rds	1.2G
Seurat4.0_Tonsil.rds	390M
Seurat4.0_Trachea.rds	262M
Seurat4.0_Uterus.rds	2.7G
Seurat4.0_Vagina.rds	131M
Seurat4.0_Visceral_adipose.rds	3.8G

Differentially expressed gene lists (46 files)

Differentially expressed gene files for each cell type from global or individual tissue clustering. Download all

File name	Size
ALL_Tissue_Global_Clustering_DEG.csv	117M
DEG_Abdominal_wall.txt.gz	2.2M
DEG_Adrenal_gland.txt.gz	1.7M
DEG_Aorta.txt.gz	1.4M
DEG_Bladder.txt.gz	2.4M
DEG_Bone_marrow.txt.gz	2.6M
DEG_Bronchus.txt.gz	2.3M
DEG_Carotid.txt.gz	2.4M
DEG_Cerebellum.txt.gz	1.7M
DEG_Colon.txt.gz	2.6M
DEG_Diaphragm.txt.gz	1.9M
DEG_Duodenum.txt.gz	3.3M
DEG_Epididymis.txt.gz	1.5M
DEG_Esophagus.txt.gz	1.8M
DEG_Fallopian_tube.txt.gz	1.5M
DEG_Gallbladder.txt.gz	922K
DEG_Heart.txt.gz	891K
DEG_Kidney.txt.gz	2.8M
DEG_Liver.txt.gz	1.7M
DEG_Lung.txt.gz	2.6M
DEG_Lymph_node.txt.gz	963K
DEG_Neocortex.txt.gz	2.3M
DEG_Ovary.txt.gz	2.8M
DEG_Pancreas.txt.gz	1.7M
DEG_PBMC.txt.gz	701K
DEG_Pigmentary_epi.txt.gz	1.3M
DEG_Pineal_gland.txt.gz	1.7M
DEG_Pituitary_gland.txt.gz	1.4M
DEG_Prostate.txt.gz	1.3M
DEG_Retina.txt.gz	2.3M
DEG_Salivary_gland.txt.gz	1.9M
DEG_Skin.txt.gz	2.5M
DEG_Spermaduct.txt.gz	1.6M
DEG_Spinal_cord.txt.gz	1.3M
DEG_Spleen.txt.gz	1.1M
DEG_Stomach.txt.gz	3.4M
DEG_Subcutaneous_adipose.txt.gz	1.4M
DEG_Substantia_nigra.txt.gz	2.7M
DEG_Testis.txt.gz	1.8M
DEG_Thyroid_gland.txt.gz	1.2M
DEG_Tongue.txt.gz	2.6M
DEG_Tonsil.txt.gz	1.9M
DEG_Trachea.txt.gz	2.5M
DEG_Uterus.txt.gz	1.8M
DEG_Vagina.txt.gz	1.1M
DEG_Visceral_adipose.txt.gz	3.2M

Sampled data (3 files)

Randomly sampled 100,000 cells, 200,000 cells and 300,000 cells from global clustering h5ad file. Download all

File name	Size
ALL_Tissue_Global_Clustering_Scanpy_sample100K.h5ad	4.2G
ALL_Tissue_Global_Clustering_Scanpy_sample200K.h5ad	6.0G
ALL_Tissue_Global_Clustering_Scanpy_sample300K.h5ad	7.8G