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Sample information (47 files)

Table of tissue, sample, data quality and cell number information. Download all

File nameSize
ALL_Tissue_Global_Clustering_infor.txt.gz11K
ALL_Tissue_Sample.txt.gz7.4K
Sample_infor_Abdominal_wall.txt.gz1.5K
Sample_infor_Adrenal_gland.txt.gz1.3K
Sample_infor_Aorta.txt.gz712B
Sample_infor_Bladder.txt.gz1.2K
Sample_infor_Bone_marrow.txt.gz1.6K
Sample_infor_Bronchus.txt.gz1.4K
Sample_infor_Carotid.txt.gz1.2K
Sample_infor_Cerebellum.txt.gz931B
Sample_infor_Colon.txt.gz1.5K
Sample_infor_Diaphragm.txt.gz1.2K
Sample_infor_Duodenum.txt.gz1.3K
Sample_infor_Epididymis.txt.gz1.1K
Sample_infor_Esophagus.txt.gz1.2K
Sample_infor_Fallopian_tube.txt.gz1.1K
Sample_infor_Gallbladder.txt.gz886B
Sample_infor_Heart.txt.gz623B
Sample_infor_Kidney.txt.gz1.5K
Sample_infor_Liver.txt.gz1.1K
Sample_infor_Lung.txt.gz1.5K
Sample_infor_Lymph_node.txt.gz1.2K
Sample_infor_Neocortex.txt.gz1.4K
Sample_infor_Ovary.txt.gz1.4K
Sample_infor_Pancreas.txt.gz984B
Sample_infor_PBMC.txt.gz939B
Sample_infor_Pigmentary_epi.txt.gz890B
Sample_infor_Pineal_gland.txt.gz1.0K
Sample_infor_Pituitary_gland.txt.gz1.3K
Sample_infor_Prostate.txt.gz1.3K
Sample_infor_Retina.txt.gz1.2K
Sample_infor_Salivary_gland.txt.gz1.3K
Sample_infor_Skin.txt.gz1.5K
Sample_infor_Spermaduct.txt.gz1.1K
Sample_infor_Spinal_cord.txt.gz992B
Sample_infor_Spleen.txt.gz1.1K
Sample_infor_Stomach.txt.gz1.8K
Sample_infor_Subcutaneous_adipose.txt.gz1.1K
Sample_infor_Substantia_nigra.txt.gz1.3K
Sample_infor_Testis.txt.gz967B
Sample_infor_Thyroid_gland.txt.gz812B
Sample_infor_Tongue.txt.gz1.6K
Sample_infor_Tonsil.txt.gz1.6K
Sample_infor_Trachea.txt.gz1.1K
Sample_infor_Uterus.txt.gz1.5K
Sample_infor_Vagina.txt.gz774B
Sample_infor_Visceral_adipose.txt.gz1.8K

Raw gene count sparse matrices (45 files)

Sparse gene (row) by cell (column) matrices of 45 tissues. Download all

Metadata (46 files)

Metadata files for global clustering and individual tissue. Download all

Processed datasets (46 files)

H5ad file for global clustering with Scanpy. Rds file for individual tissue clustering with Seurat. Download all

Differentially expressed gene lists (46 files)

Differentially expressed gene files for each cell type from global or individual tissue clustering. Download all

Sampled data (3 files)

Randomly sampled 100,000 cells, 200,000 cells and 300,000 cells from global clustering h5ad file. Download all