Genomics Data Portal
Input(Required)
Paste data, one position per line or drag file in BED format here.
Convert genome coordinates and annotation files(Required)
Configuration(Optional)
Minimum ratio of bases that must remap:
BED 4 to BED 6 Options
Allow multiple output regions:
Minimum hit size in query:
Minimum chain size in target:
BED 12 Options
If thickStart/thickEnd is not mapped, use the closest mapped base:
Min ratio of alignment blocks or exons that must map:
Lift Genome Annotations
Introduction
This tool converts genome coordinates and annotation files between assemblies. The inputdata can be entered into the text box or uploaded as a file. Note that the web tool has aninput file size limit of 10Mb.
1.Select a method to upload,you can use the BED format(one position per line) or drag file in BED format.
2.Select the genome and assembly from which the ranges were taken ("Original"), as well as the genome and assembly to which the coordinates should be converted ("New").
3.The default parameters for LiftOver are recommended for general use of the LiftOver tool. However, you may want to customize settings if you have several very large regions to convert.
4.Click Submit
Data format
1. You can use the BED format (e.g."chr4 100000 100001"0-based) or the format of the position box (chr4:100,001-100,001",1-based). We do not recommend liftOver for SNPs that have rsIDs.
2. File size limit of 10MB.