1.  Home
  2. Datamart
  3. Earth Microbiome Project

Dataset navigation

      Tree view

      The total number of samples is counted. One row is a run in the right Run data table.

        ID:DATAmic4
        New datasetUpdated dataset

        Earth Microbiome Project 40450 7

        2019-09-06

        Creator: chenfengzhen@genomics.cn

        Updater: zhanglei2@genomics.cn

        The EMP was founded in 2010 as a massive crowd-sourced effort to analyze microbial communities across the globe. The general premise was to examine microbial communities from their own perspective. Hence we proposed to characterize the Earth by environmental parameter space into different biomes and then explore these using samples drawn from researchers across the globe. We set out to analyze 200,000 samples from these communities using amplicon sequencing, metagenomics, and metabolomics to produce a global Gene Atlas describing protein space, environmental metabolic models for each biome, approximately 500,000 reconstructed microbial genomes, a global metabolic model, and a data-analysis portal for visualization of processed information.

        EMPMicrobiomedata-analysis

        P-

          Source:  NCBI BioProject  ( ID PRJEB19825 )

        Project name: -

        Description: -

        Data type : -

        Sample scope: -

        Relevance: -

        Submitter: -

        Organization: -

        Accession in other database: -

        Literature(s): -

        Release date: -

        Updated: -

        DOI: -

        Statistic:

        • Assembly: -
        • Sample: -
        • Experiments: -
        • Runs: -

        Data size : -

        Project ID Sample IDExperiment IDRun IDOrganismPlatformLibrary layoutFile
        Project IDSample IDAssembly IDOrganismMolecule typeGenome representationUpdated file
        https://db.cngb.org
        https://db.cngb.org/data_access/

        P-

          Source:  NCBI BioProject  ( ID PRJEB18099 )

        Project name: -

        Description: -

        Data type : -

        Sample scope: -

        Relevance: -

        Submitter: -

        Organization: -

        Accession in other database: -

        Literature(s): -

        Release date: -

        Updated: -

        DOI: -

        Statistic:

        • Assembly: -
        • Sample: -
        • Experiments: -
        • Runs: -

        Data size : -

        Project ID Sample IDExperiment IDRun IDOrganismPlatformLibrary layoutFile
        Project IDSample IDAssembly IDOrganismMolecule typeGenome representationUpdated file
        https://db.cngb.org
        https://db.cngb.org/data_access/

        P-

          Source:  NCBI BioProject  ( ID PRJEB18567 )

        Project name: -

        Description: -

        Data type : -

        Sample scope: -

        Relevance: -

        Submitter: -

        Organization: -

        Accession in other database: -

        Literature(s): -

        Release date: -

        Updated: -

        DOI: -

        Statistic:

        • Assembly: -
        • Sample: -
        • Experiments: -
        • Runs: -

        Data size : -

        Project ID Sample IDExperiment IDRun IDOrganismPlatformLibrary layoutFile
        Project IDSample IDAssembly IDOrganismMolecule typeGenome representationUpdated file
        https://db.cngb.org
        https://db.cngb.org/data_access/

        Please enter a positive integer less than or equal to the total number of pages

        Other details

        Referenced accession ID :

        The dataset references PRJEB19825, PRJEB18099, PRJEB18567, PRJEB15435, PRJEB18565, PRJEB15461, PRJEB14745, PRJEB4631, PRJEB18917, PRJEB18098, PRJEB18568, PRJEB15611, PRJEB14729, PRJEB18597, PRJEB14797, PRJEB18643, PRJEB18097, PRJEB18640, PRJEB18617, PRJEB18642, PRJEB15445, PRJEB15460, PRJEB15459, PRJEB15443, PRJEB14739, PRJEB18644, PRJEB19638, PRJEB14749, PRJEB20056, PRJEB19645, PRJEB14822, PRJEB20123, PRJEB15057, PRJEB15058, PRJEB15061, PRJEB14863, PRJEB14866, PRJEB15055, PRJEB14907, PRJEB15045, PRJEB19798, PRJEB14909, PRJEB14908, PRJEB14862, PRJEB15044, PRJEB14819, PRJEB14912, PRJEB4489, PRJEB14927, PRJEB15144, PRJEB14900, PRJEB14880, PRJEB14793, PRJEB14865, PRJEB14864, PRJEB14911, PRJEB15148, PRJEB15146, PRJEB14632, PRJEB14782, PRJEB21441, PRJEB15163, PRJEB9043, PRJEB15174, PRJEB15178, PRJEB14795, PRJEB14823, PRJEB15175, PRJEB14786, PRJEB15194, PRJEB15215, PRJEB15214, PRJEB15216, PRJEB15218, PRJEB14798, PRJEB14671, PRJEB15217, PRJEB19495, PRJEB19496, PRJEB19497, PRJEB19498, PRJEB19499, PRJEB19500, PRJEB15228, PRJEB14489, PRJEB14812, PRJEB14602, PRJEB20055, PRJEB14747, PRJEB14801, PRJEB15056, PRJEB21443, PRJEB15630, PRJEB14633, PRJEB14631, PRJEB6292, PRJEB19824, PRJEB14720, PRJEB19469, PRJEB14818, PRJEB14727, PRJEB14902, PRJEB15191, PRJEB14474, PRJEB14901, PRJEB10233, PRJEB15177, PRJEB13736, PRJEB14903, PRJEB14460, PRJEB11419, PRJEB14530, PRJEB11983, PRJEB15612, PRJEB14836, PRJEB18736, PRJEB20869, thanks to the submitters and researchers of the data.

        How to site the dataset :

        To respect the results of the dataset creator and updater, it is recommended to reference the dataset accession ID in the article ：

        The dataset that support this study is DATAXXXXXX which was created in CNGBdb（https://db.cngb.org）

         Copy

        Updated datasetNew dataset

        Associated dataset