2020-02-10
Creator: chenfengzhen@genomics.cn
Updater: zhanglei2@genomics.cn
Previous research had found the new coronavirus may originate in bats. The dataset of bat genome provides genome data of 41 different types of bats. The dataset will support the prevention and control of the epidemic, as well as offer scientific reference for policies on wild animals.
Source: NCBI BioProject ( ID PRJNA489141 )
Project name: Phyllostomus discolor isolate:MPI-MPIP mPhyDis1
Description: The pale spear-nose bat is a large bat, has the ability of vocal learning, and is being used to study this trait as a mammalian model of human speech acquisition. It is native to Central and South America. This reference assembly of has been produced as part of the G10K-VGP Project and Bat 1K Project. The sample was collected by the lab of Sonja Vernes and sequenced at the Rockefeller University Vertebrate Genome lab. Genome assembly was conducted by the G10K-VGP group, by Arang Rhie and Sergey Koren of Adam Phillippy's lab at NIH. Manual curation of chromosomes and other genomic features was conducted by the gEVAL group led by Kerstin Howe at the Sanger Institute, Harris Lewin and Joanna Damas at UC Davis, and the Phillippy Lab. The primary haplotype contains the longest contigs of the Pacbio FALCON unzip assembly, scaffolded with 10X linked reads, Bionano optical maps, and Arima HiC reads, with multiple tools to further separate out haplotypes. Funding was provided by the Max Planck Institute for Psycholinguistics to Sonja Vernes, HHMI and Rockefeller start-up funds to Erich Jarvis, and individual grants and awards to the persons listed above. Released from embargo April 29, 2021.
Data type : Genome sequencing and assembly
Sample scope: Monoisolate
Relevance: ModelOrganism
Submitter: -
Organization: G10K
Vertebrate Genomes Project
Max Planck Institute of Molecular Cell Biology and Genetics
Vertebrate Genomes Lab
Accession in other database: -
Literature(s):
Release date: 2019-01-28
Updated: 2018-09-03
DOI: -
Statistic:
Data size : -
Source: NCBI BioProject ( ID PRJNA399440 )
Project name: Macrotus californicus isolate:US035
Description: Draft Genome Sequence and Assembly
Data type : Genome sequencing and assembly
Sample scope: Monoisolate
Relevance: Evolution
Submitter: -
Organization: Broad Institute
Accession in other database: -
Literature(s): -
Release date: 2019-08-08
Updated: 2017-08-22
DOI: -
Statistic:
Data size : -
Source: NCBI BioProject ( ID PRJNA399355 )
Project name: Nycticeius humeralis isolate:US023
Description: Draft Genome Sequence and Assembly
Data type : Genome sequencing and assembly
Sample scope: Monoisolate
Relevance: Evolution
Submitter: -
Organization: Broad Institute
Accession in other database: -
Literature(s): -
Release date: 2019-08-08
Updated: 2017-08-22
DOI: -
Statistic:
Data size : -
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Referenced accession ID :
The dataset references GCA_004115295.1, PRJNA489141, GCA_003508835.1, GCA_001466805.2, GCA_004027375.1, GCA_004027475.1, GCA_004026545.1, GCA_004024845.1, GCA_004026585.1, GCA_004026525.1, GCA_002940915.2, GCA_004026885.1, GCA_000147115.1, GCA_004026765.1, GCA_001890085.1, GCA_004026805.1, GCA_004027415.1, GCA_004027435.1, GCA_000325575.1, GCA_001595765.1, GCA_004026625.1, GCA_004026665.1, GCA_000412655.1, GCA_004027555.1, GCA_004025005.1, GCA_000151845.2, GCA_000308155.1, GCA_004026985.1, PRJNA399440, GCA_000327345.1, PRJNA399355, PRJNA399351, GCA_000465285.1, GCA_004027735.1, GCA_000465405.1, GCA_004115245.1, PRJNA489105, PRJNA399429, GCA_004024865.1, GCA_000465495.1, GCA_000465345.1, PRJNA573298, PRJNA493209, PRJNA484322, thanks to the submitters and researchers of the data.
How to site the dataset :
To respect the results of the dataset creator and updater, it is recommended to reference the dataset accession ID in the article :
The dataset that support this study is DATAXXXXXX which was created in CNGBdb(https://db.cngb.org)
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