Dataset of bat genome 13018 2

2020-02-10

Creator: chenfengzhen@genomics.cn

Updater: zhanglei2@genomics.cn

Previous research had found the new coronavirus may originate in bats. The dataset of bat genome provides genome data of 41 different types of bats. The dataset will support the prevention and control of the epidemic, as well as offer scientific reference for policies on wild animals.

PPhyllostomus discolor (Pale spear-nosed Bat) genome sequencing and assembly, primary haplotype, v1

  Source:  NCBI BioProject  ( ID PRJNA489141 )

Project name: Phyllostomus discolor isolate:MPI-MPIP mPhyDis1

Description: The pale spear-nose bat is a large bat, has the ability of vocal learning, and is being used to study this trait as a mammalian model of human speech acquisition. It is native to Central and South America. This reference assembly of has been produced as part of the G10K-VGP Project and Bat 1K Project. The sample was collected by the lab of Sonja Vernes and sequenced at the Rockefeller University Vertebrate Genome lab. Genome assembly was conducted by the G10K-VGP group, by Arang Rhie and Sergey Koren of Adam Phillippy's lab at NIH. Manual curation of chromosomes and other genomic features was conducted by the gEVAL group led by Kerstin Howe at the Sanger Institute, Harris Lewin and Joanna Damas at UC Davis, and the Phillippy Lab. The primary haplotype contains the longest contigs of the Pacbio FALCON unzip assembly, scaffolded with 10X linked reads, Bionano optical maps, and Arima HiC reads, with multiple tools to further separate out haplotypes. Funding was provided by the Max Planck Institute for Psycholinguistics to Sonja Vernes, HHMI and Rockefeller start-up funds to Erich Jarvis, and individual grants and awards to the persons listed above. Released from embargo April 29, 2021.

Data type : Genome sequencing and assembly

Sample scope: Monoisolate

Relevance: ModelOrganism

Submitter: -

Organization: G10K
Vertebrate Genomes Project
Max Planck Institute of Molecular Cell Biology and Genetics
Vertebrate Genomes Lab

Accession in other database: -

Literature(s):

  1. Rhie A; McCarthy SA; Fedrigo O et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature,2021/04;592(7856):737-746. PMID: 33911273
  2. Formenti G; Rhie A; Balacco J et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biol,2021/04/29;22(1):120. PMID: 33910595
  3. Jebb D; Huang Z; Pippel M et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature,2020/07;583(7817):578-584. PMID: 32699395

Release date: 2019-01-28

Updated: 2018-09-03

DOI: -

Statistic:

  • Assembly: -
  • Sample: 1
  • Experiments: -
  • Runs: -

Data size : -

https://db.cngb.org
https://db.cngb.org/data_access/

PMacrotus californicus isolate:US035 Genome sequencing and assembly

  Source:  NCBI BioProject  ( ID PRJNA399440 )

Project name: Macrotus californicus isolate:US035

Description: Draft Genome Sequence and Assembly

Data type : Genome sequencing and assembly

Sample scope: Monoisolate

Relevance: Evolution

Submitter: -

Organization: Broad Institute

Accession in other database: -

Literature(s): -

Release date: 2019-08-08

Updated: 2017-08-22

DOI: -

Statistic:

  • Assembly: -
  • Sample: 1
  • Experiments: 1
  • Runs: 1

Data size : -

https://db.cngb.org
https://db.cngb.org/data_access/

PNycticeius humeralis isolate:US023 Genome sequencing and assembly

  Source:  NCBI BioProject  ( ID PRJNA399355 )

Project name: Nycticeius humeralis isolate:US023

Description: Draft Genome Sequence and Assembly

Data type : Genome sequencing and assembly

Sample scope: Monoisolate

Relevance: Evolution

Submitter: -

Organization: Broad Institute

Accession in other database: -

Literature(s): -

Release date: 2019-08-08

Updated: 2017-08-22

DOI: -

Statistic:

  • Assembly: -
  • Sample: 1
  • Experiments: 1
  • Runs: 1

Data size : -

https://db.cngb.org
https://db.cngb.org/data_access/
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Other details

How to site the dataset :

To respect the results of the dataset creator and updater, it is recommended to reference the dataset accession ID in the article :

The dataset that support this study is DATAXXXXXX which was created in CNGBdb(https://db.cngb.org)

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