Data

  Gene Catalog Reference

  Gene profile, taxonomic profile, KO profile

  Gene Annotation

Summary

Gene catalogSample sizeNumber of genesTotal length(bp)Average length(bp)N50(bp)N90(bp)Max length(bp)Min length(bp)
Macaque201,991,1691,507,900,19475799940240,851102

* N50: it is the length for which the collection of all contigs of that length or longer contains at least half of the total of the lengths of the contigs
* N90: it is the length for which the collection of all contigs of that length or longer contains at least 90% of the total of the lengths of the contigs

  Gene length

  Phylum composition

  Genus composition

Reference

1. Xie, H. et al. Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome. Cell Syst. 0, 32–46 (2016).

s Xiaoping Li, Suisha Liang, Zhongkui Xia, Jing Qu, Huan Liu, Chuan Liu, Huanming Yang, Jian Wang, Lise Madsen, Yong Hou, Junhua Li, Huijue Jia, Karsten Kristiansen, Liang Xiao; Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes, GigaScience, Volume 7, Issue 9, 1 September 2018, giy100, https://doi.org/10.1093/gigascience/giy100

Xiao, L., Feng, Q., Liang, S., Sonne, S. B., Xia, Z., Qiu, X., … Kristiansen, K. (2015). A catalog of the mouse gut metagenome. Nature Biotechnology, 33(10), 1103–1108. doi:10.1038/nbt.3353

1. Xiao, L. et al. A reference gene catalogue of the pig gut microbiome. Nat. Microbiol. 1, 1–6 (2016).

Pan H, Guo R, Zhu J, et al. A gene catalogue of the Sprague-Dawley rat gut metagenome[J]. GigaScience, 2018, 7(5): giy055.