RNA Coverage Track Prediction
This feature leverages the extensive pre-training of the Genos foundation model on genomic data to predict single-base-resolution RNA-seq expression profiles directly from DNA sequences, spanning multiple cell types and tissues. It establishes a direct mapping between genomic sequence and transcriptomic expression, facilitating the understanding of gene-regulatory mechanisms and accelerating transcriptomic research. The input is a point of the hg38 reference genome; the output is the average, normalized RNA-seq signal value (single-base precision) for each genomic position of a 32Kbp region, on both the positive and negative strands in various cell types.
Usage
Follow the 2 steps below to select and submit a start point to generate signal intensity and gene list of target 32Kbp region started with the start point.
- Select or change a start point in the genome browser. There are several ways to achieve, feel free to combine the operations:
- Click on the ideogram directly.
- Click the arrow buttons to move backward or forward. Click the magnifier buttons to zoom in or zoom out.
- Input a region (eg. chrX:123-789) in the input field, then press Enter key to confirm.
- Move the mouse over the ruler bar (the bar below the input field) to select a region, then click "Zoom to region" to confirm.
- Drag to left or right on any track (eg. "NCBI RefSeq Genes" track).
- Submit and wait for result for several seconds.

Current start point: chr19:39,407,000