Comparison of open-source SNP-based clustering to coregenome MLST for outbreak tracing in a hospital setting - Project - Data resources

PRJNA691722

Comparison of open-source SNP-based clustering to coregenome MLST for outbreak tracing in a hospital setting
Source: NCBI BioProject (ID PRJNA691722)

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Project name: Enterococcus faecium and Staphylococcus aureus

Description: Study comparing clusters of methicillin resistant Staphylococcus aureus (MRSA) and Enterococcus faecium analyzed with the commercial cgMLST software Ridom SeqSphere+ and with an open-source single-nucleotide polymorphism (SNP) based phylogenetic analysis pipeline (PAPABAC).

Data type: raw sequence reads

Sample scope: Multispecies

Relevance: Medical

Organization: Copenhagen University Hospital Hvidovre

Last updated: 2021-01-13

Statistics: 157 samples; 157 experiments; 157 runs