Quantifying the limits of accurate and reproducible SNP frequency estimates for influenza within-host sequencing - Project - Data resources

PRJNA363070

Quantifying the limits of accurate and reproducible SNP frequency estimates for influenza within-host sequencing
Source: NCBI BioProject (ID PRJNA363070)

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Project name: Influenza A virus (A/California/04/2009(H1N1))

Description: Clinical viral isolates often contain very low genome copy numbers. To interrogate the limitations that viral copy number places on the ability to accurately and reproducibly quantify variants, we generated a dilution series of a 2009 pandemic influenza virus ranging from 102 to 107 DNA copies and sequenced the HA gene in triplicate on an Illumina MiSeq.

Data type: raw sequence reads

Sample scope: Multiisolate

Relevance: Medical

Organization: University of Wisconsin-Madison

Last updated: 2017-01-24

Statistics: 33 samples; 33 experiments; 33 runs