Endogenous miRNA targets identified by sequencing of the Soybean degradome
Source: NCBI BioProject (ID PRJNA215930)
Source: NCBI BioProject (ID PRJNA215930)
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Project name: Glycine max
Description: To identify more targets in soybean, particularly specific targets of Cd-stress-responsive miRNAs, high-throughput degradome sequencing was used. In total, we obtained 8913111 raw reads from the library which was constructed from a mixture of four samples (HX3-CK, HX3-Cd-treatment, ZH24-CK and ZH24-Cd-treatment). After removing the reads without the CAGAG adaptor, 5430126 unique raw-reads were obtained. The unique sequences were aligned to the G. max genome database, and 6516276 reads were mapped to the genome. The mapped reads from the libraries represented 51481 annotated G. max genes.Overall design: Identification of miRNA targerts in soybean roots
Data type: Transcriptome or Gene expression
Sample scope: Monoisolate
Relevance: Agricultural
Organization: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University
Literatures
- PMID: 24363811
Last updated: 2013-08-21