Azospirillum palustre sp. nov., a methylotrophic nitrogen-fixing species isolated from raised bog.
Int J Syst Evol Microbiol, 2019/9;69(9):2787-2793.
Tikhonova EN[1], Grouzdev DS[2], Kravchenko IK[1]
Affiliations
PMID: 31237535DOI: 10.1099/ijsem.0.003560
Impact factor: 2.689
Abstract
Nitrogen-fixing bacterial strain, designated B2T, was isolated from methane-oxidation enrichment originating from a Sphagnum-dominated raised peatland in Tver region, Russia, and its phenotypic, chemotaxonomic and genomic characteristics were investigated. Cells of isolate were Gram-negative, aerobic, rod or spiral-shaped, with motility provided by a single polar flagellum in liquid media and peritrichous flagella on solid media. Strain was able to grow at 15-40 °C, pH 5.5-8.5 and tolerated NaCl to 2.0 % (w/v). Strain B2T gave positive amplification for dinitrogen reductase (nifH gene) and acetylene reduction activity was recorded up to 1250 nmol ethylene h-1 (mg protein)-1. Analysis of 16S rRNA showed that B2T represents a member of the genus Azospirillum and had the highest sequence similarity with A. humicireducens SgZ-5T (97.92 %). The predominant quinone system was ubiquinone Q-10 and the major fatty acids were C18 : 1ω7, C16 : 1ω7 and C16 : 0. The strain was facultative methylotrophic and used methanol and formate for the growth. Genome sequencing revealed a genome size of 8.0 Mbp and a G+C content of 67.8 mol%. The mxaFI genes encoding methanol dehydrogenase were absent, but a homologous xoxF gene was detected. The genes encoding enzymes involved in the biosynthesis of tetrahydromethanopterin (H4MPT) (formaldehyde oxidation) and NAD-linked formate dehydrogenase (fdsABG) were identified. Pairwise determined whole genome average nucleotide identity (gANI) values confirmed that strain B2T represents a novel species, for which we propose the name Azospirillum palustre sp. nov. with the type strain B2T (VKM B-3233T, КСТС 62613Т).
Keywords: Azospirillum; Rhodospirillaceae; genome; methylotrophy; raised bog
MeSH terms
Azospirillum; Bacterial Typing Techniques; Base Composition; DNA, Bacterial; Fatty Acids; Nitrogen Fixation; Phylogeny; RNA, Ribosomal, 16S; Russia; Sequence Analysis, DNA; Ubiquinone; Wetlands
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