The complete mitogenome of the dampwood termite Zootermopsis nevadensis (Insecta: Isoptera: Termopsidae).
Mitochondrial DNA A DNA Mapp Seq Anal, 2016;27(2):1163-4.
Qian ZQ[1]
Affiliations
PMID: 25010077DOI: 10.3109/19401736.2014.936419
Impact factor: 1.695
Abstract
The complete mitogenome of the dampwood termite Zootermopsis nevadensis was reconstructed from whole-genome Illumina sequencing data with an average coverage of 7052×. The circular genome is 15,444 bp in length, and consists of 22 transfer RNAs (tRNAs), 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs) and one D-loop region. All PCGs are initiated with ATN codons, except for the ND1 and ND5 genes with the start codon GTG. Some PCGs harbor TAG (ND1) or incomplete stop codon T (COII, ND5 & Cytb), while the others use TAA as their stop codons. The nucleotide composition is asymmetric (45.8% A, 19.8% C, 10.9% G, 23.5% T) with an overall GC content of 30.7%. These data would contribute to the design of novel molecular markers for population and evolutionary studies of this and related termite species.
Keywords: Data mining; MITObim; illumina sequencing; mitochondrial genome; next-generation sequencing (NGS)
MeSH terms
Animals; Base Composition; Base Sequence; Evolution, Molecular; Genetic Markers; Genome, Mitochondrial; Insect Proteins; Isoptera; Mitochondrial Proteins; Molecular Sequence Data; RNA; RNA, Mitochondrial; RNA, Ribosomal; RNA, Transfer
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