Introduction
Script
Input
Output
scATAC-seq_analysis_base_on_ArchR
Introduction
scATAC-seq analysis base on ArchR is a tool for ATAC-seq basic analysis with ArchR, including qc、 mapping、clusters、visualization、marker genes and cell annotation
Script
Input
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| * scATAC_analysis_base_on_ArchR | FragmentFiles | File | single-cell ATAC data |
| * scATAC_analysis_base_on_ArchR | ref | String | The version of the reference genome |
| * scATAC_analysis_base_on_ArchR | sample_name | String | sample name |
Output
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| * scATAC_analysis_base_on_ArchR | Arrow | File | output ArrowFiles file |
| * scATAC_analysis_base_on_ArchR | ArchRProject | File | output ArchRProject file |
| * scATAC_analysis_base_on_ArchR | QC | File | output Quality control |
| * scATAC_analysis_base_on_ArchR | Sample_Clusters | File | output clustering |
| * scATAC_analysis_base_on_ArchR | Marker_Gene | File | output makere gene |
| * scATAC_analysis_base_on_ArchR | PredictedsubGroup | File | output cell annotations |
| * scATAC_analysis_base_on_ArchR | Projrds | File | output analysis |