Codeplot
Introduction
Script
Input
Output
louvain
Introduction

cluster cells into subgroups by louvain

Script
Input
Task nameAttribute nameTypeDescription
*
      main
    project_nameString
      project name
    
*
      main
    anndataFile
      Input object format：anndata
    
*
      main.louvain
    use_weightsBoolean
      Use weights from knn graph.
    
*
      main.louvain
    resolutionFloat
      For the default flavor ('vtraag'), you can provide a resolution (higher resolution means finding more and smaller clusters), which defaults to 1.0.
    
*
      main.louvain
    memoryString
      Number of memory running tasksnotice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8 
    
*
      main.louvain
    flavorString
      可选值[‘vtraag’, ‘igraph’, ‘rapids’] ；Choose between to packages for computing the clustering. 'vtraag' is much more powerful, and the default.
    
*
      main.louvain
    dockerString
      --
    
*
      main.louvain
    directedBoolean
      Interpret the adjacency matrix as directed graph?
    
*
      main.louvain
    cpuString
      Number of CPU running tasks.notice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8
    
Output
Task nameAttribute nameTypeDescription
*
      main
    clustfileFile
      Return the output file to the column name of the corresponding table by this.xxx
    
*
      main
    h5adfileFile
      Return the output file to the column name of the corresponding table by this.xxx