Introduction
Script
Input
Output
edgeR
Introduction
Differential expression analysis of digital gene expression data by edgeR
Script
Input
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| * GetDegByedgeR | qual_file | File | Transcriptome quantitative file in csv or xlsx format. |
| * GetDegByedgeR | group_file | File | group file, which can be a CSV or xlsx format, must contain two columns: sample and group. The name of sample must exist in the quantitative file |
| * GetDegByedgeR | gene_colname_w | String | Column name of gene ID in quantitative file |
| * GetDegByedgeR | compare_groups_w | Array[String] | Groups that need to be compared are connected with "- vs -" between the comparison groups,such as ["DE-VS-ES", "DE-VS-GT"] |
| GetDegByedgeR | scatter_number_tmp | Int | Number of sample groups shown in the picture |
| GetDegByedgeR | qvalue_tmp | Float | value of q-value |
| GetDegByedgeR | foldchange_tmp | Int | value of foldchange that is a measure describing how much a quantity changes between an original and a subsequent measurement |
| GetDegByedgeR | do_merge_tmp | Boolean | if 'true' ,merge all quantitative file |
Output
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| GetDegByedgeR | tot_csv | File | total Quantitative file, Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | scat_file_w | File | picture of relationship between samples，, Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | mscal_file_w | File | Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | bcv_file_w | File | Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | mv_file_w | File | Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | sm_files_w | File | Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | vol_files_w | File | Return the output file to the column name of the corresponding table by this.xxx |
| GetDegByedgeR | diff_files_w | File | Return the output file to the column name of the corresponding table by this.xxx |