Codeplot
cactus_blast
Introduction

The first step of the process after the completion of preprocess.

Script
Input
Task nameAttribute nameTypeDescription
* cactus_step2.cactus_blast out_nameString Output pairwise alignment file
* cactus_step2.cactus_blast in_rootString Name of ancestral node (which must appear in NEWICK tree in <seqfile>) to use as a root for the alignment.Any genomes not below this node in the tree may be used as outgroups but will never appear in the output.if no root is specifed then the root of the tree is used.
* cactus_step2.cactus_blast in_fa_namesArray[String] names (must be same number as --in_fa_files) of path overrides
* cactus_step2.cactus_blast in_fa_filesArray[File] paths (multiple allowed) to override from seqFile
* cactus_step2 seq_fileFile Seq file
* cactus_step2 memoryString Number of memory running tasksnotice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8
* cactus_step2 cpuString Number of CPU running tasks.notice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8
* cactus_step2 config_fileFile Specify cactus configuration file
Output
Task nameAttribute nameTypeDescription
* cactus_step2 out_filesArray[File] output blast out file list .return the output file to the column name of the corresponding table by this.xxx