盘点 | CNGBdb科研支撑成果汇【更新至20190903】

CNGBdb下属的CNSA板块不仅是数据管理助手，还是文章发表助手，截止到2019年9月3日，CNSA已支持论文发表近60篇，发表期刊包括Nature子刊、NAR等。

IF ≥20

1. Zou Y, Xue W, Luo G, et al. 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses[J]. Nature biotechnology, 2019, 37(2): 179.
   IF：31.864      CNSA编号：CNP0000126

2. Bai H, Guo X, Narisu N, et al. Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia[J]. Nature genetics, 2018, 50(12): 1696.
   IF：25.455   CNSA编号：CNP0000063

3. Hu Y, Chen J, Fang L, et al. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton[J]. Nature genetics, 2019, 51(4): 739.
   IF：25.455      CNSA编号：CNP0000046

4. Varshney R K, Thudi M, Roorkiwal M, et al. Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits[J]. Nature genetics, 2019, 51(5): 857.
   IF：25.455      CNSA编号：CNP0000370

5. Yang N, Liu J, Gao Q et al.Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement[J].Nature genetics. 2019 Jun;51(6):1052-1059.
   IF：25.455      CNSA编号：CNP0000417/CNP0000418/CNP0000419/CNP0000420

10 ≤ IF ＜ 20

1. Liu X, Zhang W, Zhao M, et al. T cell receptor β repertoires as novel diagnostic markers for systemic lupus erythematosus and rheumatoid arthritis[J]. Annals of the rheumatic diseases, 2019: annrheumdis-2019-215442.
   IF：14.299      CNSA编号：CNP0000113 /CNP0000152 /CNP0000154

7.Natarajan K N, Miao Z, Jiang M, et al. Comparative analysis of sequencing technologies platforms for single-cell transcriptomics[J].Genome Biol.2019 Apr 9;20(1):70.
IF：14.028CNSA编号：CNP0000075

1. Wang Z, Miao H, Liu J, et al. Musa balbisiana genome reveals subgenome evolution and functional divergence[J]. Nature plants, 2019, 5(8): 810-821.
   IF：13.297   CNSA编号：CNP0000292

2. Zhu F, Guo R, Wang W, et al. Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice[J]. Molecular Psychiatry, 2019: 1-14.
   IF：11.973   CNSA编号：CNP0000119

3. Hong S, Liu D, Luo S, et al. The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma[J]. Nature communications, 2019, 10(1): 3108.
   IF：11.878      CNSA编号：CNP0000327

4. Liu L, Liu C, Quintero A, et al. Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity[J]. Nature communications, 2019, 10(1): 470.
   IF：11.878      CNSA编号：CNP0000213

5. Liu L, Leng L, Liu C, et al. An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos[J]. Nature communications, 2019, 10(1): 364.
   IF：11.878    CNSA编号：CNP0000193

6. Li Y, Fu X, Ma J, et al. Altered respiratory virome and serum cytokine profile associated with recurrent respiratory tract infections in children[J]. Nature communications, 2019, 10.
   IF：11.878     CNSA编号：CNP0000429

7. Song W, Sun H X, Zhang C, et al. Prophage Hunter: an integrative hunting tool for active prophages[J]. Nucleic acids research, 2019.
   IF：11.147     CNSA编号：CNP0000380

8. Xu L, Auer G, Peona V, et al. Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds[J]. Nature ecology & evolution, 2019, 3(5): 834.
   IF：10.965     CNSA编号：CNP0000186

9. Zhong H, Penders J, Shi Z, et al. Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children[J]. Microbiome, 2019, 7(1): 2.
   IF：10.465     CNSA编号：CNP0000037

IF ＜10

1. Wang O, Chin R, Cheng X, et al. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly[J]. Genome research, 2019, 29(5): 798-808. IF：9.944      CNSA编号：CNP0000066

2. Gao W, Sun Y B, Zhou W W, et al. Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity[J]. Proceedings of the National Academy of Sciences, 2019, 116(9): 3646-3655.
   IF：9.58CNSA编号：CNP0000203

3. Feng S, Fang Q, Barnett R, et al. The genomic footprints of the fall and recovery of the crested ibis[J]. Current Biology, 2019, 29(2): 340-349. e7.
   IF：9.193CNSA编号：CNP0000084

4. Ji X, Li J, Huang Y, et al. Identifying occult maternal malignancies from 1.93 million pregnant women undergoing noninvasive prenatal screening tests[J]. Genetics in Medicine, 2019: 1. IF：8.683      CNSA编号：CNP0000067

5. Gao F J, Li J K, Chen H, et al. Genetic and clinical findings in a large cohort of Chinese patients with suspected retinitis pigmentosa[J]. Ophthalmology, 2019.
   IF：7.732     CNSA编号：CNP0000453

6. Zhang D D, Wang J, Wang D, et al. Population genomics demystifies the defoliation phenotype in the plant pathogen Verticillium dahliae[J]. New Phytologist, 2019, 222(2): 1012-1029.
   IF：7.299     CNSA编号：CNP0000156

7. Fan G, Zhang Y, Liu X, et al. The first chromosome‐level genome for a marine mammal as a resource to study ecology and evolution[J]. Molecular ecology resources, 2019.
   IF：7.049   CNSA编号：CNP0000020/CNA0002349

8. He Y, Chang Y, Bao L, et al. A chromosome‐level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth[J]. Molecular ecology resources, 2019.
   IF：7.049    CNSA编号：CNP0000222/CNA0000824

9. Li L, Wu P, Luo Z, et al. Dean flow assisted single cell and bead encapsulation for high performance single cell expression profiling[J]. ACS sensors, 2019.
   IF：6.944   CNSA编号：CNP0000223

10. Zhang D, Yang Y, Qin Q, et al. MALDI-TOF Characterization of Protein Expression Mutation During Morphological Changes of Bacteria Under the Impact of Antibiotics[J]. Analytical chemistry, 2019, 91(3): 2352-2359.
    IF：6.35     CNSA编号：CNP0000194

11. Cai H, Li Q, Fang X, et al. A draft genome assembly of the solar-powered sea slug Elysia chlorotica[J]. Scientific data, 2019, 6: 190022.
    IF：5.929    CNSA编号：CNP0000110

12. Liu C, Wang M, Wei X, et al. An ATAC-seq atlas of chromatin accessibility in mouse tissues[J]. Scientific data, 2019, 6(1): 65.
    IF：5.929     CNSA编号：CNP0000198

13. Xia Q, Pan L, Zhang R, et al. The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis[J]. Scientific data, 2019, 6(1): 124.
    IF：5.929     CNSA编号：CNP0000264

14. Chang Y, Liu H, Liu M, et al. The draft genomes of five agriculturally important African orphan crops[J]. GigaScience, 2018, 8(3): giy152.
    IF：4.688    CNSA编号：CNP0000096

15. Zhao Y, Li X, Zhao W, et al. Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood[J]. GigaScience, 2019, 8(5): giz047.
    IF：4.688    CNSA编号：CNP0000090

16. Guo M, Chen J, Li Q, et al. Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life[J]. Frontiers in microbiology, 2018, 9: 3138.
    IF：4.259     CNSA编号：CNP0000135

17. Gan S H, Yang F, Sahu S K, et al. Deciphering the Composition and Function Profile of the Microbial Communities in Chinese Moutai Liquor Starters[J]. Frontiers in microbiology, 2019, 10: 1540.
    IF：4.259     CNSA编号：CNP0000316

18. Liang H, Wei T, Xu Y, et al. Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida[J]. International journal of molecular sciences, 2019, 20(12): 3020.
    IF：4.183    CNSA编号：CNP0000452

19. Fang M, Abolhassani H, Pan-Hammarström Q, et al. Compound Heterozygous Mutations of IL2-Inducible T cell Kinase in a Swedish Patient: the Importance of Early Genetic Diagnosis[J]. Journal of clinical immunology, 2019, 39(2): 131-134.
    IF：4.128    CNSA编号：CNP0000214

20. Wu T, Li L, Jiang X, et al. Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater[J].Sci Rep. 2019 Jul 2;9(1):9514.
    IF：4.011  CNSA编号：CNP0000212

21. Dong Z, Zhao X, Li Q, et al. Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay[J]. DNA Res. 2019 Jun 7. pii: dsz011. 
    IF：4     CNSA编号：CNP0000078

22. Bigoni S, Neri M, Scotton C, et al. Homozygous recessive Versican missense variation is associated with early teeth loss in a Pakistani family[J]. Frontiers in genetics, 2018, 9: 723.
    IF：3.517   CNSA编号：CNP0000163

23. Hu F, Li J, Gao F, et al. ABCA4 gene screening in a Chinese cohort with Stargardt disease: Identification of 37 novel variants[J]. Frontiers in Genetics, 2019, 10: 773.
    IF：3.517        CNSA编号：CNP0000503

24. Li Q, Zhao X, Zhang W, et al. Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform[J]. BMC genomics, 2019, 20(1): 215.
    IF：3.501     CNSA编号：CNP0000071

25. Lan T M, Lin Y, Njaramba-Ngatia J, et al. Improving Species Identification of Ancient Mammals Based on Next-Generation Sequencing Data[J]. Genes, 2019, 10(7): 509.
    IF：3.331    CNSA编号：CNP0000209  

26. Sun X, Gostinčar C, Fang C, et al. Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola[J]. Genes, 2019, 10(6): 427.
    IF：3.331   CNSA编号：CNP0000446

27. Kinkar L, Korhonen P K, Cai H, et al. Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1[J]. Parasites & vectors, 2019, 12(1): 238.
    IF：3.031    CNSA编号：CNP0000438

28. Cheng B, Mo X, Feng Q, et al. The novel HLA-C* 08: 80 allele identified by full-length sequencing of the HLA region[J]. Hla, 2019, 93(6): 500.
    IF：2.785     CNSA编号：CNP0000342

29. Zhao H, Chen J, Wang Q, et al. Compositional and functional features of the female premenopausal and postmenopausal gut microbiota[J]. FEBS letters, 2019.
    IF：2.675     CNSA编号：CNP0000398

30. Chen X, Li S, Zhang D, et al. Sequencing of a wild apple (Malus baccata) genome unravels the differences between cultivated and wild apple species regarding disease resistance and cold tolerance[J]. G3: Genes, Genomes, Genetics, 2019, 9(7): 2051-2060.
    IF：2.63    CNSA编号：CNP0000421/CNA00002537

31. Xu Y, Lin Z, Tang C, et al. A new massively parallel nanoball sequencing platform for whole exome research[J]. BMC bioinformatics, 2019, 20(1): 153.
    IF：2.511     CNSA编号：CNP0000165

32. Li M, Wang B, Li L, et al. Rift Valley Fever Virus and Yellow Fever Virus in Urine: A Potential Source of Infection[J]. Virologica Sinica, 2019: 1-4.
    IF：2.467   CNSA编号：CNP0000083

33. Ngatia J N, Lan T M, Dinh T D, et al. Signals of positive selection in mitochondrial protein‐coding genes of woolly mammoth: Adaptation to extreme environments?[J]. Ecology and Evolution, 2019.
    IF：2.415     CNSA编号：CNP0000277/CNP0000209

34. Li C, Tan X, Bai J, et al. A survey of the sperm whale (Physeter catodon) commensal microbiome[J]. PeerJ, 2019, 7: e7257.
    IF：2.353    CNSA编号：CNP0000020

35. Li F N, Liao S L, Liu S W, et al. Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)[J]. Journal of Microbiology, 2019: 1-7.
    IF：2.319    CNSA编号：CNP0000366/CNS0050027/CNA0002485

36. Zhang Y, Zhong Y, Hong Y, et al. RAD-Seq data advance captive-based conservation of wild bactrian camels (Camelus ferus)[J]. Conservation Genetics, 2019: 1-8.
    IF：2.283     CNSA编号：CNP0000149

37. Sun Y, Yuan J, Wu L, et al. Panel-based NGS reveals disease-causing mutations in hearing loss patients using BGISEQ-500 platform[J]. Medicine, 2019, 98(12): e14860.
    IF：1.87     CNSA编号：CNP0000280

38. Cao J, Shen R, Zhang W, et al. Clinical diagnosis and genetic counseling of atypical ataxia‑telangiectasia in a Chinese family[J]. Molecular medicine reports, 2019, 19(5): 3441-3448.
    IF：1.851     CNSA编号：CNP0000265

39. Wang H, Wan Y, Yang Y, et al. Novel compound heterozygous mutations in OCA2 gene associated with non-syndromic oculocutaneous albinism in a Chinese Han patient: a case report[J]. BMC medical genetics, 2019, 20(1): 130. IF：1.74     CNSA编号：CNP0000188

40. Wei J, Xiu Z, Ou H, et al. Transcriptome Profile Analysis of Twisted Leaf Disease Response in Susceptible Sugarcane with Narenga porphyrocoma Genetic Background[J]. Tropical Plant Biology, 2019: 1-11.
    IF：0.975     CNSA编号：CNP0000220

41. 禹奇超,宋彬,邹轩轩,等.乳腺癌癌旁组织特异性表达基因分析[J]. 遗传,2019,Vol.41,Issue (7): 625-633.
    IF：0.896   CNSA编号：CNP0000385

42. Li L, Li H, Kumar Sahu S, et al. The complete chloroplast genome of Tetraselmis desikacharyi (Chlorodendrophyceae) and phylogenetic analysis[J]. Mitochondrial DNA Part B, 2019, 4(1): 1692-1693.
    IF：0.561     CNSA编号：CNP0000390

43. Wu C, Fang D, Wei J, et al. The complete chloroplast genome of Pedicularis alaschanica (Orobanchaceae)[J]. Mitochondrial DNA Part B, 2019, 4(2): 2197-2198.
    IF：0.561   CNSA编号：CNP0000279/CNA0002395