Introduction
Script
Input
Output
norm
Introduction
this workflow normalize counts per cell and ogarithmize the data matrix by scanpy.pp.normalize_total and scanpy.pp.log1p.
Script
Input
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| * main | project_name | String | project name |
| * main | anndata | File | Input object format：anndata |
| main.normalize | target_sum | Float | -- |
| main.normalize | memory | String | -- |
| main.normalize | docker | String | -- |
| main.normalize | cpu | String | -- |
Output
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| main | h5adfile | File | Return the output file to the column name of the corresponding table by this.xxx |