Codeplot
Introduction
Script
Input
Output
leiden
Introduction

cluster cells into subgroups by leident

Script
Input
Task nameAttribute nameTypeDescription
*
      main
    project_nameString
      project name
    
*
      main
    anndataFile
      Input object format：anndata
    
*
      main.leiden
    use_weightsBoolean
      If True, edge weights from the graph are used in the computation (placing more emphasis on stronger edges).
    
*
      main.leiden
    resolutionFloat
      A parameter value controlling the coarseness of the clustering. Higher values lead to more clusters. Set to None if overriding partition_type to one that doesn’t accept a resolution_parameter.
    
*
      main.leiden
    n_iterationsFloat
      How many iterations of the Leiden clustering algorithm to perform. Positive values above 2 define the total number of iterations to perform, -1 has the algorithm run until it reaches its optimal clustering.
    
*
      main.leiden
    memoryString
      Number of memory running tasksnotice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8
    
*
      main.leiden
    dockerString
      --
    
*
      main.leiden
    directedBoolean
      Whether to treat the graph as directed or undirected.
    
*
      main.leiden
    cpuString
      Number of CPU running tasks.notice:1. The value range is 0.25-32 cores, in addition, 48 cores and 64 cores can be selected, and the CPU must be an integer multiple of 0.25 cores; 2. The memory value range is 1GB-512GB, and the memory must be an integer multiple of 1GB. 3. The CPU / memory ratio must be between 1:2 and 1:8
    
Output
Task nameAttribute nameTypeDescription
*
      main
    clustfileFile
      Return the output file to the column name of the corresponding table by this.xxx
    
*
      main
    h5adfileFile
      Return the output file to the column name of the corresponding table by this.xxx