Codeplot
GWAS
Introduction

genome-wide association study (GWA study, or GWAS), The software GAPIT was used for correlation analysis.

Script
Input
Task nameAttribute nameTypeDescription
* GWAS YFile Phenotype
* GWAS PcaTotalInt Total Number of PCs as Covariates
* GWAS ModelString Choose model to conduct GWAS
* GWAS GMFile Genotype Map for Numeric Format,include the chromosome and base pair position of each SNP
* GWAS GDFile Genotype Data in Numeric Format
Output
Task nameAttribute nameTypeDescription
* runGapit outpdfArray[File] output pdf
* runGapit outcsvArray[File] output csv