Introduction
Script
Input
Output
GWAS
Introduction
genome-wide association study (GWA study, or GWAS), The software GAPIT was used for correlation analysis.
Script
Input
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| * GWAS | Y | File | Phenotype |
| * GWAS | PcaTotal | Int | Total Number of PCs as Covariates |
| * GWAS | Model | String | Choose model to conduct GWAS |
| * GWAS | GM | File | Genotype Map for Numeric Format,include the chromosome and base pair position of each SNP |
| * GWAS | GD | File | Genotype Data in Numeric Format |
Output
| Task name | Attribute name | Type | Description |
|---|---|---|---|
| runGapit | outpdf | Array[File] | output pdf |
| runGapit | outcsv | Array[File] | output csv |