Soybean is an important crop to provide plant protein and oil for human beings and livestock. Revealing the spatial and temporal expression of soybean genes is critical for the understanding of its organ development. Thus, we constructed this database, Soybean Organ Transcriptomic Atlas (SOTA), to host and present the snRNA-seq and Stereo-seq data we generated for the five representative soybean organs (root, nodule, shoot apical meristem, leaf, and stem). SOTA provides download access to the data, online presentation and exploration of the cell clustering and annotation results of both the single cell/nucleus sequencing data and the spatial transcriptome sequencing data, as well as 3D models of root and nodule with gene expression to be shown in spatial positions. This database can facilitate exploring gene expressions and cell types, making it a valuable resource for accelerating future soybean research and breeding.
Search for the annotation and gene expression in each single nucleus RNAseq dataset.
Search for cell bin annotation and gene expression in each organ.
Three dimensional models of root and nodule constructed through integrating continuous Stereo-seq data of the two organs, as well as their X-ray images. Gene expression can be shown in the 3D models with spatial position available.
Access available processed data and metadata.