Multi-omics Reveals Immune Response and Metabolic Profiles during High-Altitude Mountaineering

Summary
The physiological perturbations induced by high-altitude exposure in mountain climbers, manifesting as immunologic and metabolic deviations, have been previously reported but are not fully understood. In this study, we obtained longitudinal multi-omic profiles of blood samples for healthy mountain climbers during two mountaineering stages (acclimatization and extreme altitude mountaineering). Our integrative assay included single-cell transcriptomic analysis of 375,722 immune cells coupled with metabolomics and lipidomics profiling of plasma. Longitudinal analysis revealed dynamic immune response profiles, during the acclimatization period, characterized by the downregulation of inflammatory responses in monocytes and classical dendritic cells (cDCs) and an increase in the proportion of cytotoxic CD8+ T cells with enhanced immune effector processes. In contrast, during extreme altitude mountaineering, the activation of inflammatory responses and impairment of T cell effector function were observed, concomitant with an increased cellular response to hypoxia and oxidative stress pathways. Furthermore, we found upregulated glycolysis and antioxidant gene expression during extreme altitude mountaineering, which was primarily orchestrated by HIF1A and NFE2L2, while decreased expression of these genes was observed in dysregulated plasmacytoid dendritic cells (pDCs). Finally, high-resolution plasma metabolic analysis revealed significant alterations in the metabolism of climbers, involving enhanced glutamine and fatty acid metabolism.
Overall design
Single-cell RNA sequencing reveals immune responses of PBMCs during High-Altitude Mountaineering.
Contributors
Jianhua Yin†, Jingzhi Lv†, Shichen Yang†, Yang Wang†, Chuanyu Liu✉️, Xin Jin✉️, Jian Wang✉️
Contact
liuchuanyu@genomics.cn (C.L.), jinxin@genomics.cn (X.J.), wangjian@genomics.cn (J.W.)
Sample name | Sample title | Disease | Gender | Age | Source | Treatment | Technology | Platform | Omics | Sample ID | Dataset ID | Action |
---|---|---|---|---|---|---|---|---|---|---|---|---|
D01_V01 | Mountaineering Volunteer 1_D01 | Mountaineering | Male | 43 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V01 | CNP0005218 | |
D01_V02 | Mountaineering Volunteer 2_D01 | Mountaineering | Male | 53 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V02 | CNP0005218 | |
D01_V03 | Mountaineering Volunteer 3_D01 | Mountaineering | Male | 44 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V03 | CNP0005218 | |
D01_V04 | Mountaineering Volunteer 4_D01 | Mountaineering | Female | 33 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V04 | CNP0005218 | |
D01_V05 | Mountaineering Volunteer 5_D01 | Mountaineering | Male | 47 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V05 | CNP0005218 | |
D01_V06 | Mountaineering Volunteer 6_D01 | Mountaineering | Male | 27 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V06 | CNP0005218 | |
D01_V07 | Mountaineering Volunteer 7_D01 | Mountaineering | Male | 22 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V07 | CNP0005218 | |
D01_V08 | Mountaineering Volunteer 8_D01 | Mountaineering | Male | 18 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V08 | CNP0005218 | |
D01_V09 | Mountaineering Volunteer 9_D01 | Mountaineering | Male | 52 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V09 | CNP0005218 | |
D01_V10 | Mountaineering Volunteer 10_D01 | Mountaineering | Female | 42 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V10 | CNP0005218 | |
D01_V11 | Mountaineering Volunteer 11_D01 | Mountaineering | Male | 30 | PBMCs | Altitude 1289m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D01_V11 | CNP0005218 | |
D04_V01 | Mountaineering Volunteer 1_D04 | Mountaineering | Male | 43 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V01 | CNP0005218 | |
D04_V02 | Mountaineering Volunteer 2_D04 | Mountaineering | Male | 53 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V02 | CNP0005218 | |
D04_V03 | Mountaineering Volunteer 3_D04 | Mountaineering | Male | 44 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V03 | CNP0005218 | |
D04_V04 | Mountaineering Volunteer 4_D04 | Mountaineering | Female | 33 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V04 | CNP0005218 | |
D04_V05 | Mountaineering Volunteer 5_D04 | Mountaineering | Male | 47 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V05 | CNP0005218 | |
D04_V06 | Mountaineering Volunteer 6_D04 | Mountaineering | Male | 27 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V06 | CNP0005218 | |
D04_V07 | Mountaineering Volunteer 7_D04 | Mountaineering | Male | 22 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V07 | CNP0005218 | |
D04_V08 | Mountaineering Volunteer 8_D04 | Mountaineering | Male | 18 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V08 | CNP0005218 | |
D04_V09 | Mountaineering Volunteer 9_D04 | Mountaineering | Male | 52 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V09 | CNP0005218 | |
D04_V10 | Mountaineering Volunteer 10_D04 | Mountaineering | Female | 42 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V10 | CNP0005218 | |
D04_V11 | Mountaineering Volunteer 11_D04 | Mountaineering | Male | 30 | PBMCs | Altitude 4400m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D04_V11 | CNP0005218 | |
D09_V01 | Mountaineering Volunteer 1_D09 | Mountaineering | Male | 43 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V01 | CNP0005218 | |
D09_V02 | Mountaineering Volunteer 2_D09 | Mountaineering | Male | 53 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V02 | CNP0005218 | |
D09_V03 | Mountaineering Volunteer 3_D09 | Mountaineering | Male | 44 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V03 | CNP0005218 | |
D09_V04 | Mountaineering Volunteer 4_D09 | Mountaineering | Female | 33 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V04 | CNP0005218 | |
D09_V05 | Mountaineering Volunteer 5_D09 | Mountaineering | Male | 47 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V05 | CNP0005218 | |
D09_V06 | Mountaineering Volunteer 6_D09 | Mountaineering | Male | 27 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V06 | CNP0005218 | |
D09_V07 | Mountaineering Volunteer 7_D09 | Mountaineering | Male | 22 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V07 | CNP0005218 | |
D09_V08 | Mountaineering Volunteer 8_D09 | Mountaineering | Male | 18 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V08 | CNP0005218 | |
D09_V09 | Mountaineering Volunteer 9_D09 | Mountaineering | Male | 52 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V09 | CNP0005218 | |
D09_V10 | Mountaineering Volunteer 10_D09 | Mountaineering | Female | 42 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V10 | CNP0005218 | |
D09_V11 | Mountaineering Volunteer 11_D09 | Mountaineering | Male | 30 | PBMCs | Altitude 5500m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D09_V11 | CNP0005218 | |
D11_V01 | Mountaineering Volunteer 1_D11 | Mountaineering | Male | 43 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V01 | CNP0005218 | |
D11_V02 | Mountaineering Volunteer 2_D11 | Mountaineering | Male | 53 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V02 | CNP0005218 | |
D11_V03 | Mountaineering Volunteer 3_D11 | Mountaineering | Male | 44 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V03 | CNP0005218 | |
D11_V04 | Mountaineering Volunteer 4_D11 | Mountaineering | Female | 33 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V04 | CNP0005218 | |
D11_V05 | Mountaineering Volunteer 5_D11 | Mountaineering | Male | 47 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V05 | CNP0005218 | |
D11_V06 | Mountaineering Volunteer 6_D11 | Mountaineering | Male | 27 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V06 | CNP0005218 | |
D11_V07 | Mountaineering Volunteer 7_D11 | Mountaineering | Male | 22 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V07 | CNP0005218 | |
D11_V08 | Mountaineering Volunteer 8_D11 | Mountaineering | Male | 18 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V08 | CNP0005218 | |
D11_V09 | Mountaineering Volunteer 9_D11 | Mountaineering | Male | 52 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V09 | CNP0005218 | |
D11_V10 | Mountaineering Volunteer 10_D11 | Mountaineering | Female | 42 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V10 | CNP0005218 | |
D11_V11 | Mountaineering Volunteer 11_D11 | Mountaineering | Male | 30 | PBMCs | Altitude 6300m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D11_V11 | CNP0005218 | |
D16_V01 | Mountaineering Volunteer 1_D16 | Mountaineering | Male | 43 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V01 | CNP0005218 | |
D16_V02 | Mountaineering Volunteer 2_D16 | Mountaineering | Male | 53 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V02 | CNP0005218 | |
D16_V03 | Mountaineering Volunteer 3_D16 | Mountaineering | Male | 44 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V03 | CNP0005218 | |
D16_V04 | Mountaineering Volunteer 4_D16 | Mountaineering | Female | 33 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V04 | CNP0005218 | |
D16_V05 | Mountaineering Volunteer 5_D16 | Mountaineering | Male | 47 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V05 | CNP0005218 | |
D16_V06 | Mountaineering Volunteer 6_D16 | Mountaineering | Male | 27 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V06 | CNP0005218 | |
D16_V07 | Mountaineering Volunteer 7_D16 | Mountaineering | Male | 22 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V07 | CNP0005218 | |
D16_V08 | Mountaineering Volunteer 8_D16 | Mountaineering | Male | 18 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V08 | CNP0005218 | |
D16_V09 | Mountaineering Volunteer 9_D16 | Mountaineering | Male | 52 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V09 | CNP0005218 | |
D16_V10 | Mountaineering Volunteer 10_D16 | Mountaineering | Female | 42 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V10 | CNP0005218 | |
D16_V11 | Mountaineering Volunteer 11_D16 | Mountaineering | Male | 30 | PBMCs | Altitude 7546m | DNBelab C4 | DNBSEQ-T1 | scRNA-seq | 5218_D16_V11 | CNP0005218 |