Multi-omics Reveals Immune Response and Metabolic Profiles during High-Altitude Mountaineering

CNP0005218
Basic information
Cell
375,722
Sample
55

Technology
DNBelab C4
Omics
scRNA-seq
Source
PBMCs

Dataset ID
CNP0005218
Platform
BGISEQ-T1
Species
Human
Disease
Mountaineering
Age range
18 - 53
Update date
2024-09-24
Summary

The physiological perturbations induced by high-altitude exposure in mountain climbers, manifesting as immunologic and metabolic deviations, have been previously reported but are not fully understood. In this study, we obtained longitudinal multi-omic profiles of blood samples for healthy mountain climbers during two mountaineering stages (acclimatization and extreme altitude mountaineering). Our integrative assay included single-cell transcriptomic analysis of 375,722 immune cells coupled with metabolomics and lipidomics profiling of plasma. Longitudinal analysis revealed dynamic immune response profiles, during the acclimatization period, characterized by the downregulation of inflammatory responses in monocytes and classical dendritic cells (cDCs) and an increase in the proportion of cytotoxic CD8+ T cells with enhanced immune effector processes. In contrast, during extreme altitude mountaineering, the activation of inflammatory responses and impairment of T cell effector function were observed, concomitant with an increased cellular response to hypoxia and oxidative stress pathways. Furthermore, we found upregulated glycolysis and antioxidant gene expression during extreme altitude mountaineering, which was primarily orchestrated by HIF1A and NFE2L2, while decreased expression of these genes was observed in dysregulated plasmacytoid dendritic cells (pDCs). Finally, high-resolution plasma metabolic analysis revealed significant alterations in the metabolism of climbers, involving enhanced glutamine and fatty acid metabolism.

Overall design

Single-cell RNA sequencing reveals immune responses of PBMCs during High-Altitude Mountaineering.

Contributors

Jianhua Yin†, Jingzhi Lv†, Shichen Yang†, Yang Wang†, Chuanyu Liu✉️, Xin Jin✉️, Jian Wang✉️

Contact

liuchuanyu@genomics.cn (C.L.), jinxin@genomics.cn (X.J.), wangjian@genomics.cn (J.W.)

snRNA-Seq
Sample nameSample titleDiseaseGenderAgeSourceTreatmentTechnologyPlatformOmicsSample IDDataset IDAction
D01_V01Mountaineering Volunteer 1_D01MountaineeringMale43PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V01CNP0005218

D01_V02Mountaineering Volunteer 2_D01MountaineeringMale53PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V02CNP0005218

D01_V03Mountaineering Volunteer 3_D01MountaineeringMale44PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V03CNP0005218

D01_V04Mountaineering Volunteer 4_D01MountaineeringFemale33PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V04CNP0005218

D01_V05Mountaineering Volunteer 5_D01MountaineeringMale47PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V05CNP0005218

D01_V06Mountaineering Volunteer 6_D01MountaineeringMale27PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V06CNP0005218

D01_V07Mountaineering Volunteer 7_D01MountaineeringMale22PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V07CNP0005218

D01_V08Mountaineering Volunteer 8_D01MountaineeringMale18PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V08CNP0005218

D01_V09Mountaineering Volunteer 9_D01MountaineeringMale52PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V09CNP0005218

D01_V10Mountaineering Volunteer 10_D01MountaineeringFemale42PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V10CNP0005218

D01_V11Mountaineering Volunteer 11_D01MountaineeringMale30PBMCsAltitude 1289mDNBelab C4DNBSEQ-T1scRNA-seq5218_D01_V11CNP0005218

D04_V01Mountaineering Volunteer 1_D04MountaineeringMale43PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V01CNP0005218

D04_V02Mountaineering Volunteer 2_D04MountaineeringMale53PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V02CNP0005218

D04_V03Mountaineering Volunteer 3_D04MountaineeringMale44PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V03CNP0005218

D04_V04Mountaineering Volunteer 4_D04MountaineeringFemale33PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V04CNP0005218

D04_V05Mountaineering Volunteer 5_D04MountaineeringMale47PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V05CNP0005218

D04_V06Mountaineering Volunteer 6_D04MountaineeringMale27PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V06CNP0005218

D04_V07Mountaineering Volunteer 7_D04MountaineeringMale22PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V07CNP0005218

D04_V08Mountaineering Volunteer 8_D04MountaineeringMale18PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V08CNP0005218

D04_V09Mountaineering Volunteer 9_D04MountaineeringMale52PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V09CNP0005218

D04_V10Mountaineering Volunteer 10_D04MountaineeringFemale42PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V10CNP0005218

D04_V11Mountaineering Volunteer 11_D04MountaineeringMale30PBMCsAltitude 4400mDNBelab C4DNBSEQ-T1scRNA-seq5218_D04_V11CNP0005218

D09_V01Mountaineering Volunteer 1_D09MountaineeringMale43PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V01CNP0005218

D09_V02Mountaineering Volunteer 2_D09MountaineeringMale53PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V02CNP0005218

D09_V03Mountaineering Volunteer 3_D09MountaineeringMale44PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V03CNP0005218

D09_V04Mountaineering Volunteer 4_D09MountaineeringFemale33PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V04CNP0005218

D09_V05Mountaineering Volunteer 5_D09MountaineeringMale47PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V05CNP0005218

D09_V06Mountaineering Volunteer 6_D09MountaineeringMale27PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V06CNP0005218

D09_V07Mountaineering Volunteer 7_D09MountaineeringMale22PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V07CNP0005218

D09_V08Mountaineering Volunteer 8_D09MountaineeringMale18PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V08CNP0005218

D09_V09Mountaineering Volunteer 9_D09MountaineeringMale52PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V09CNP0005218

D09_V10Mountaineering Volunteer 10_D09MountaineeringFemale42PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V10CNP0005218

D09_V11Mountaineering Volunteer 11_D09MountaineeringMale30PBMCsAltitude 5500mDNBelab C4DNBSEQ-T1scRNA-seq5218_D09_V11CNP0005218

D11_V01Mountaineering Volunteer 1_D11MountaineeringMale43PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V01CNP0005218

D11_V02Mountaineering Volunteer 2_D11MountaineeringMale53PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V02CNP0005218

D11_V03Mountaineering Volunteer 3_D11MountaineeringMale44PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V03CNP0005218

D11_V04Mountaineering Volunteer 4_D11MountaineeringFemale33PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V04CNP0005218

D11_V05Mountaineering Volunteer 5_D11MountaineeringMale47PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V05CNP0005218

D11_V06Mountaineering Volunteer 6_D11MountaineeringMale27PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V06CNP0005218

D11_V07Mountaineering Volunteer 7_D11MountaineeringMale22PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V07CNP0005218

D11_V08Mountaineering Volunteer 8_D11MountaineeringMale18PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V08CNP0005218

D11_V09Mountaineering Volunteer 9_D11MountaineeringMale52PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V09CNP0005218

D11_V10Mountaineering Volunteer 10_D11MountaineeringFemale42PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V10CNP0005218

D11_V11Mountaineering Volunteer 11_D11MountaineeringMale30PBMCsAltitude 6300mDNBelab C4DNBSEQ-T1scRNA-seq5218_D11_V11CNP0005218

D16_V01Mountaineering Volunteer 1_D16MountaineeringMale43PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V01CNP0005218

D16_V02Mountaineering Volunteer 2_D16MountaineeringMale53PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V02CNP0005218

D16_V03Mountaineering Volunteer 3_D16MountaineeringMale44PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V03CNP0005218

D16_V04Mountaineering Volunteer 4_D16MountaineeringFemale33PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V04CNP0005218

D16_V05Mountaineering Volunteer 5_D16MountaineeringMale47PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V05CNP0005218

D16_V06Mountaineering Volunteer 6_D16MountaineeringMale27PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V06CNP0005218

D16_V07Mountaineering Volunteer 7_D16MountaineeringMale22PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V07CNP0005218

D16_V08Mountaineering Volunteer 8_D16MountaineeringMale18PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V08CNP0005218

D16_V09Mountaineering Volunteer 9_D16MountaineeringMale52PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V09CNP0005218

D16_V10Mountaineering Volunteer 10_D16MountaineeringFemale42PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V10CNP0005218

D16_V11Mountaineering Volunteer 11_D16MountaineeringMale30PBMCsAltitude 7546mDNBelab C4DNBSEQ-T1scRNA-seq5218_D16_V11CNP0005218

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