Human haematopoietic stem cell lineage commitment is a continuous process

Basic information
Cell
1,413
Sample
2

Technology
Smart-Seq2
QUARTZ-seq
Omics
scRNA-seq
Source
Bone Marrow

Dataset ID
28319093
Platform
Illumina HiSeq 2500
Species
Human
Disease
Healthy
Age range
25 - 29
Update date
2017-03-20
Summary

Blood formation is believed to occur through stepwise progression of haematopoietic stem cells (HSCs) following a tree-like hierarchy of oligo-, bi- and unipotent progenitors. However, this model is based on the analysis of predefined flow-sorted cell populations. Here we integrated flow cytometric, transcriptomic and functional data at single-cell resolution to quantitatively map early differentiation of human HSCs towards lineage commitment. During homeostasis, individual HSCs gradually acquire lineage biases along multiple directions without passing through discrete hierarchically organized progenitor populations. Instead, unilineage-restricted cells emerge directly from a 'continuum of low-primed undifferentiated haematopoietic stem and progenitor cells' (CLOUD-HSPCs). Distinct gene expression modules operate in a combinatorial manner to control stemness, early lineage priming and the subsequent progression into all major branches of haematopoiesis. These data reveal a continuous landscape of human steady-state haematopoiesis downstream of HSCs and provide a basis for the understanding of haematopoietic malignancies.

Overall design

overall_design too long too uplode

Contributors

Lars Velten 1, Simon F Haas 2 3 4, Simon Raffel 2 4 5, Sandra Blaszkiewicz 2 3, Saiful Islam 6, Bianca P Hennig 1, Christoph Hirche 2 3, Christoph Lutz 5, Eike C Buss 5, Daniel Nowak 7, Tobias Boch 7, Wolf-Karsten Hofmann 7, Anthony D Ho 5, Wolfgang Huber 1, Andreas Trumpp 2 4 8, Marieke A G Essers 2 3, Lars M Steinmetz 1 6 9

Contact

To be supplemented.

snRNA-Seq
Sample nameSample titleDiseaseGenderAgeSourceTreatmentTechnologyPlatformOmicsSample IDDataset IDAction
No data available