Resource
Metadata
Cell Atlas
GRN
xQTL
CIMA-CLM
Once CIMA data is publicly available, you can batch download the full dataset using the following command.
We recommend that you use Raysync High-Speed Download.
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource

Metadata (2 Files )

Batch download for Metadata files will be available once CIMA data is publicly released. 
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/Metadata/
File nameDescriptionSize Tools
CIMA_Sample_Information_Metadata.csv
78KB
CIMA_Sample_Omics_Metadata.csv
11KB

Cell Atlas (19 Files )

Batch download for Metadata files will be available once CIMA data is publicly released.
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/Cell_Atlas/
File nameDescriptionSize Tools
CIMA_RNA_6484974cells_36326genes_compressed.h5ad
44.4GB
CIMA_RNA_B_566569cells_36326genes_compressed.h5ad
4.1GB
CIMA_RNA_Myeloid_754770cells_36326genes_compressed.h5ad
6.0GB
CIMA_RNA_NK_503083cells_36326genes_compressed.h5ad
3.4GB
CIMA_RNA_CD4T_2320103cells_36326genes_compressed.h5ad
15.4GB
CIMA_RNA_CD8T_2340449cells_36326genes_compressed.h5ad
15.7GB
CIMA_ATAC_3762242cells_338036peaks_compressed.h5ad
33.6GB
CIMA_ATAC_Fragments.tar
249.3GB
CIMA_ATAC_Cell_Type_Peakset.csv.zip
6.6MB
CIMA_Cell_Type_L4_COSG_Marker_Results.csv
5.3MB
CIMA_Cell_Type_L4_scATAC_Proportion_Age_Related.csv
3KB
CIMA_Cell_Type_L4_scATAC_Proportion_Sex_Related.csv
3KB
CIMA_Cell_Type_L4_scATAC_Proportion.csv
263KB
CIMA_Cell_Type_L4_scRNA_Proportion_Age_Related.csv
3KB
CIMA_Cell_Type_L4_scRNA_Proportion_Sex_Related.csv
3KB
CIMA_Cell_Type_L4_scRNA_Proportion.csv
360KB
CIMA_Cell_Type_Level_and_Marker.xlsx
20.4KB
CIMA_Sample_Blood_Biochemistry_Results.csv
40KB
CIMA_Sample_Plasma_Metabolites_and_Lipids_Results.csv
5.7MB

GRN (6 Files )

Batch download for GRN files will be available once CIMA data is publicly released. 
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/GRN/
File nameDescriptionSize Tools
CIMA_eRegulons_Metadata.csv
Metadata of all eRegulons115.2MB
CIMA_Sex_Related_eRegulons.csv
1.4MB
CIMA_Age_Related_eRegulons.csv
556KB
CIMA_eRegulons_Activators_Exp_AUC_RSS.csv
1.3MB
CIMA_eRegulons_AUC_Large_than_1_in_cell_type_L4.csv
23KB
CIMA_Selected_High_Quality_eRegulons.csv
7KB

xQTL (10 Files )

Batch download for xQTL files will be available once CIMA data is publicly released. 
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/xQTL/
File nameDescriptionSize Tools
CIMA_Trans-eQTL.xlsx
41.1KB
CIMA_Traits_Used_for_SMR_Analysis.xlsx
22.2KB
CIMA_Significant_SMR_Pleiotropic_Associations.xlsx
398.7KB
CIMA_In_House_GWAS_of_Lipids_and_Metabolisms.xlsx
45.7KB
CIMA_Chinese_Selection_Loci.xlsx
14.9KB
CIMA_Cell_Type-specific_Analysis_of_cis-xQTLs.xlsx
330.0KB
CIMA_Ancestry-specific_loci_in_cis-xQTLs.xlsx
1.3MB
CIMA_caQTL_eQTL_SMR.csv
3.5MB
CIMA_Lead_cis-xQTL.csv
60.3MB
CIMA_Dynamic_eQTL_of_Bcells_and_Monocytes.csv
835.1KB

CIMA-CLM (2 Files )

Batch download for CIMA-CLM files will be available once CIMA data is publicly released. 
wget -r -np -nH --cut-dirs=5 ftp://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/CIMA-CLM/
File nameDescriptionSize Tools
CIMA-CLM_Demo.tar.gz
CIMA-CLM Demo1.8MB
CIMA-CLM_Cell_Type_Models.tar.gz
CIMA-CLM Model of Cell Types6.4GB