Resource
Metadata
Cell Atlas
GRN
xQTL
CIMA-CLM
Full Length
The CIMA dataset is highly popular with a large number of daily download requests. For faster and more stable large-scale data transfer, we strongly recommend using RaySync with the following steps:
1. Download RaySync
Get the tool from: https://ftp.cngb.org/pub/course/tool/raysync/
2. Use RaySync to Download Data
To access and download specific files or directories (see the CIMA resource directory: https://ftp.cngb.org/pub/SciRAID/trueblood/cima/CIMA_Resource/), simply click the "RaySync" icon on the Resource Download page to copy and execute the corresponding command.
For additional details and guidance, please refer to the Readme: https://db.cngb.org/trueblood/readme.en.txt
If you encounter any issues during the download process, please contact us at CNGBdb@genomics.cn.

Metadata (2 Files )

File nameSize Tools
CIMA_Sample_Information_Metadata.csv
78KB
CIMA_Sample_Omics_Metadata.csv
11KB

Cell Atlas (19 Files )

File nameSize Tools
CIMA_RNA_6484974cells_36326genes_compressed.h5ad
44.4GB
CIMA_RNA_B_566569cells_36326genes_compressed_20260305.h5ad
4.1GB
CIMA_RNA_Myeloid_754770cells_36326genes_compressed_20260305.h5ad
6.0GB
CIMA_RNA_NK_503083cells_36326genes_compressed_20260305.h5ad
3.4GB
CIMA_RNA_CD4T_2320103cells_36326genes_compressed_20260305.h5ad
15.4GB
CIMA_RNA_CD8T_2340449cells_36326genes_compressed_20260305.h5ad
15.7GB
CIMA_ATAC_3762242cells_338036peaks_compressed.h5ad
33.6GB
CIMA_ATAC_Fragments.tar
249.3GB
CIMA_ATAC_Cell_Type_Peakset.csv.zip
6.6MB
CIMA_Cell_Type_L4_COSG_Marker_Results.csv
5.3MB
CIMA_Cell_Type_L4_scATAC_Proportion_Age_Related.csv
3KB
CIMA_Cell_Type_L4_scATAC_Proportion_Sex_Related.csv
3KB
CIMA_Cell_Type_L4_scATAC_Proportion.csv
263KB
CIMA_Cell_Type_L4_scRNA_Proportion_Age_Related.csv
3KB
CIMA_Cell_Type_L4_scRNA_Proportion_Sex_Related.csv
3KB
CIMA_Cell_Type_L4_scRNA_Proportion.csv
360KB
CIMA_Cell_Type_Level_and_Marker.xlsx
20.4KB
CIMA_Sample_Blood_Biochemistry_Results.csv
40KB
CIMA_Sample_Plasma_Metabolites_and_Lipids_Results.csv
5.7MB

GRN (6 Files )

File nameSize Tools
CIMA_eRegulons_Metadata.csv
115.2MB
CIMA_Sex_Related_eRegulons.csv
1.4MB
CIMA_Age_Related_eRegulons.csv
556KB
CIMA_eRegulons_Activators_Exp_AUC_RSS.csv
1.3MB
CIMA_eRegulons_AUC_Large_than_1_in_cell_type_L4.csv
23KB
CIMA_Selected_High_Quality_eRegulons.csv
7KB

xQTL (10 Files )

File nameSize Tools
CIMA_Trans-eQTL.xlsx
41.1KB
CIMA_Traits_Used_for_SMR_Analysis.xlsx
22.2KB
CIMA_Significant_SMR_Pleiotropic_Associations.xlsx
398.7KB
CIMA_In_House_GWAS_of_Lipids_and_Metabolisms.xlsx
45.7KB
CIMA_Chinese_Selection_Loci.xlsx
14.9KB
CIMA_Cell_Type-specific_Analysis_of_cis-xQTLs.xlsx
330.0KB
CIMA_Ancestry-specific_loci_in_cis-xQTLs.xlsx
1.3MB
CIMA_caQTL_eQTL_SMR.csv
3.5MB
CIMA_Lead_cis-xQTL.csv
60.3MB
CIMA_Dynamic_eQTL_of_Bcells_and_Monocytes.csv
835.1KB

CIMA-CLM (2 Files )

File nameSize Tools
CIMA-CLM_Demo.tar.gz
1.8MB
CIMA-CLM_Cell_Type_Models.tar.gz
6.4GB

Full Length (5 Files )

File nameSize Tools
ASLM_Sample_Information_Metadata.csv
11KB
ASLM_Longread_103869cells_78401isoforms.h5ad
77.2MB
ASLM_Shortread_103869cells_30771genes.rds
1.5GB
ASLM_scTCR_11027paired.rds
1.3MB
ASLM_scBCR_5678paired.rds
665.6KB