Cell TypeMarkers
CD4 TCD3D+,CD4+,CD8A-,CD8B-
CD4 NaïveCD3D+,CD4+,CD8A-,CD8B-,TRABD2A+,MAL+,CCR7+,SELL+,LEF1+,TCF7+,GP183-
CD4 Tn-SOX4CD3D+,CD4+,CD8A-,CCR7+,SELL+,SOX4+,TOX2+,GPR183-
CD4 Tn-CCR7CD3D+,CD4+,CD8A-,CCR7+,SELL+,GPR183-
CD4 Tn-CXCR5CD3D+,CD4+,CD8A-,CCR7+,SELL+,CXCR5+,GPR183-
CD4 Tn-LIMS1CD3D+,CD4+,CD8A-,CCR7+,SELL+,LIMS1+,GPR183-
CD4 MemoryCD3D+,CD4+,CD8A-,CD8B-,CD44+,S100A4+,GPR183+
CD4 TcmCD3D+,CD4+,CD8A-,CD8B-,CD44+,S100A4+,GPR183+,CCR7+
CD4 TemCD3D+,CD4+,CD8A-,CD8B-,CD44+,S100A4+,GPR183+,CCR7-
CD4 Tcm-CXCR5CD3D+,CD4+,CD8A-,CCR7+,S100A4+,GPR183+,CXCR5+
CD4 Tcm-IFI44LCD3D+,CD4+,CD8A-,CCR7+,S100A4+,GPR183+,IFI44L+
CD4 Tem-CCR7negCD3D+,CD4+,CD8A-,CCR7-,S100A4+,GPR183+
CD4 Tem-CCR5CD3D+,CD4+,CD8A-,CCR7-,S100A4+,GPR183+,CCR5+,GZMK+,CXCR6+,FOXB1+,IL10+,CD84+,CTLA4+
CD4 T HelperCD3D+,CD4+,CD8A-,CD8B-,CCR7-
CD4 Tfh-like-CXCR5CD3D+,CD4+,CD8A-,CCR7-,CR1+,CXCR5+,LIMS1+,CCR6+,PASK+,CD84+
CD4 Th-CR1CD3D+,CD4+,CD8A-,CCR7-,CR1+
CD4 Th-LMNACD3D+,CD4+,CD8A-,CCR7-,LMNA+,LGALS1+
CD4 Th-CCR4CD3D+,CD4+,CD8A-,CCR7-,CCR4+
CD4 Th-TNFRSF11ACD3D+,CD4+,CD8A-,CCR7-,TNFRSF11A+
CD4 Th1-like-GZMKCD3D+,CD4+,CD8A-,CCR7-,GZMK+,LYAR+,CCL5+,KLRB1+
CD4 Th17-like-RORCCD3D+,CD4+,CD8A-,CCR7-,RORC+,KLRB1+,PDE4D+,CCR6+,IL4I1+,TNFSF13B+
CD4 Th22-like-CCR10CD3D+,CD4+,CD8A-,CCR7-,CCR10+,LMNA+,LGALS3+
CD4 RegulatoryCD3D+,CD4+,CD8A-,CD8B-,CTLA4+
CD4 Tr1-likeCD3D+,CD4+,CD8A-,CD8B-,CTLA4+,FOXP3-,IL2RA-
CD4 TregCD3D+,CD4+,CD8A-,CD8B-,CTLA4+,FOXP3+,IL2RA+,IKZF2+,TIGIT+,RTKN2+
CD4 Tr1-like-IL10CD3D+,CD4+,CD8A-,CTLA4+,FOXP3-,IL2RA-,IL10+,HAVCR2+,EOMES+,GZMK+
CD4 Treg-FCRL3CD3D+,CD4+,CD8A-,FOXP3+,IL2RA+,IKZF2+,TIGIT+,RTKN2+,FCRL3+,CTLA4-
CD4 Treg-FOXP3CD3D+,CD4+,CD8A-,FOXP3+,IL2RA+,IKZF2+,TIGIT+,RTKN2+,FOXP3+,DUSP4+,CTLA4+
CD4 CTLCD3D+,CD4+,CD8A-,CD8B-,IL7R-,CX3CR1+,GZMA+,GZMH+,NKG7+,GNLY+
CD4 CTL-GZMHCD3D+,CD4+,CD8A-,IL7R-,CX3CR1+,GZMA+,GZMH+,FGFBP2+,CCL4+,S1PR5+
CD8 TCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-
CD8 NaïveCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-,TRABD2A+,MAL+,CCR7+,SELL+,LEF1+,TCF7+
CD8 MemoryCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-,CD44+,S100A4+,GPR183+
CD8 CTLCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-,GZMA+,GZMH+,NKG7+,GNLY+
CD8 TcmCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-,CD44+,S100A4+,GPR183+,CCR7+
CD8 TemCD3D+,CD4-,CD8A+,CD8B+,NCAM1-,NCR1-,CD44+,S100A4+,GPR183+,CCR7-
CD8 Tn-SOX4CD3D+,CD4-,CD8A+,CCR7+,SELL+,SOX4+,LRRN3+,GPR183-
CD8 Tn-CCR7CD3D+,CD4-,CD8A+,CCR7+,SELL+,GPR183-
CD8 Tcm-IFI44LCD3D+,CD4-,CD8A+,CCR7+,SELL+,S100A4+,GPR183+,IFI44L+
CD8 Tem-CCR7negCD3D+,CD4-,CD8A+,CCR7-,SELL-,S100A4+,GPR183+,GZMK+,CCL5+,RGS1+,TIGIT+,CD84+,PIK3R1+,CMC1+
CD8 CTL-GZMKCD3D+,CD4-,CD8A+,GZMK+,CD82+,RGS1+
CD8 CTL-IFI44LCD3D+,CD4-,CD8A+,GZMK+,IFI44L+,IFIT1+,IFIT3+,MX1+,OAS1+,OAS3+
CD8 CTL-GZMBCD3D+,CD4-,CD8A+,GZMB+,GZMH+,ZNF683+,ITGB1+,LILRB1+,NKG7+,FGFBP2+
other T--
Cycling TCD3D+,MKI67+
Pre-T-likeCD3D+,CD4low,CD8low,CABP4+,NOTCH1+
γδTCD3D+,TRDC+
MAITCD3D+,SLC4A10+,KLRB1+
NKTCD3D+,NCAM1+,KLRF1+,KLRC2+,KLRC3+,TYROBP+,FCGR3A+
γδT 1CD3D+,TRDC+,KLRC2+,FCGR3A+,TRGC2+,TRDV1+
γδT 2CD3D+,TRDC+,KLRC1+,KLRB1+,TRGC1+,IL7R+
Cycling T-MKI67CD3D+,CD4+,CD8A+,MKI67+,TYMS+,TOP2A+,KIT+
pre-T-like-CABP4CD3D+,CD4low,CD8low,CABP4+,NOTCH1+,FOXP1+,STAB1+
γδT 1-TRDV1CD3D+,CD4-,CD8A-,NCAM1-,TRDC+,KLRC2+,FCGR3A+,TRGC2+,TRDV1+,RTKN2+,IKZF2+,MME+,SOX4+,CR1+,TOX2+
γδT 2-GZMKCD3D+,CD4-,CD8A-,NCAM1-,TRDC+,KLRC1+,KLRB1+,TRGC1+,IL7R+,GZMK+,TRDV2-,DUSP2+
γδT 2-IL12RB2CD3D+,CD4-,CD8A-,NCAM1-,TRDC+,KLRC1+,KLRB1+,TRGC1+,IL7R+,IL12RB2+,TRDV2+,GZMK+,DUSP2+,IL18RAP+,TRGV9+
γδT 2-GZMHCD3D+,CD4-,CD8A-,NCAM1-,TRDC+,KLRC1+,KLRB1+,TRGC1+,IL7R+,GZMH+,TRDV2+,GNLY+,KLRC1+,IL18RAP+,TRDV9+,ZNF683+
MAIT-SLC4A10CD3D+,CD4-,CD8A+,NCAM1-,SLC4A10+,KLRB1+,CCR6+,CXCR6+,GZMK+,LTK+,RORC+
NKT-NCR1CD3D+,CD4-,CD8A-,NCAM1+,NCR1+,KLRF1+,KLRC2+,KLRC3+,TYROBP+,FCGR3A+,IGFBP7+
NKT-IFNGCD3D+,CD4-,CD8A-,NCAM1lowKLRF1+,KLRC2+,KLRC3+,TYROBP+,FCGR3A+,IFNG+,NCR1+,TNF+,CCL3+
B cellsCD79A+
Transitional BCD79A+,CD19+,MS4A1+,NEIL1+,CD9+,CD24+,TCL1A+,SOX4+
Naïve BCD79A+,CD19+,MS4A1+,CD27-,IGHD+,TCL1A+,IL4R+,FCER2+,BACH2+
Memory BCD79A+,CD19+,MS4A1+,CD27+,IGHA1+
Total PlasmaCD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+
Aptypical BmCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,ITGAX+,FCRL5+
Unswitched BmCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C+
pre-Switched BmCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C-
Switched BmCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD-
PlsamablastCD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+,MKI67+
PlasmaCD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+,MKI67-
Transitional B-SOX4CD79A+,CD19+,MS4A1+,NEIL1+,CD9+,CD24+,TCL1A+,SOX4+,MME+
Bn-TCL1ACD79A+,CD19+,MS4A1+,CD27-,IGHD+,TCL1A+,IL4R+,FCER2+,BACH2+
Bn-IL6CD79A+,CD19+,MS4A1+,CD27-,IGHD+,TCL1A+,IL4R+,FCER2+,BACH2+,IL6+,KLF4+,CD83+,CR2+
Bn-IFIT3CD79A+,CD19+,MS4A1+,CD27-,IGHD+,TCL1A+,IL4R+,FCER2+,BACH2+,IFIT3+,IFI44L+,IFI44+,XAF1+
Atypical Bm-ITGAXCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,ITGAX+,FCRL5+,ZEB2+,FCRL3+,SOX5+,LILRB2+,SIGLEC6+
Unswitched Bm-IL6CD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C+,IL6+,TNFSF9+,EGR1+,EGR3+,HES1+,NR4A1+,NR4A2+
Unswitched Bm-CD1CCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C+,SOX7+,CPED1+
pre-Switched Bm-IFIT3CD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C-,IFIT3+,IFIT1+,OAS3+,IFI44L+,IFI44+
pre-Switched Bm-JAM3CD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD+,CD1C-,JAM3+
Switched Bm-IGHDnegCD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD-
Switched Bm-IGHECD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD-,IGHE+,IGHEP1+,COCH+,CD82+
Switched activated Bm-CD86CD79A+,CD19+,MS4A1+,CD27+,IGHA1+,IGHD-,CD86+,S100A10+,COCH+,CRIP2+
Plasmablast-MKI67CD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+,MKI67+,TYMS+,CDC20+,UBE2C+,TOP2A+
Plasma-IGHA1CD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+,MKI67-,IGHGA1+
Plasma-IGHG1CD79A+,CD19-,MS4A1-,SDC1+,JCHAIN1+,XBP1+,MZB1+,TNFRSF17+,MKI67-,IGHG1+,IGHGP+,IGHG4+,IGHG2+
HSPCCD34+
HSPC-CD34CD34+,CYTL1+,GATA2+,KIT+,SOX4+,CPA3+
MyeloidCD68+,AIF1+
MKCD68+,GP9+,TUBB1+,PF4+,PPBP+
cDCCD68+,ITGAX+,CD74+,HLA-,DPB1+
pDCCD68+,ITGAX-,LILRA4+,IRF4+,IL17A+
MonocyteCD68+,FCN1+,LYZ+,CTSD+
cMonoCD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A-,VCAN+,S100A8+,S100A9+,S100A12+
intMonoCD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A+,S100A8+,S100A9+,S100A12+
ncMonoCD68+,FCN1+,LYZ+,CTSD+,CD14-,FCGR3A+,LYZ-,CDKN1C+,SIGLEC10+,SIM25+
MK-GP9GP9+,TUBB1+,PF4+,PPBP+
cDC-CSF2RACD68+,ITGAX+,CD74+,HLA-,DBP1+,CSF2RA+,PLGC2+
cDC1-BATF3CD68+,ITGAX+,CD74+,HLA-,DBP1+,BATF3+,CLEC9A+,XCR1+,IDO1+
cDC2-CD1CCD68+,ITGAX+,CD74+,HLA-,DBP1+,CD1C+,FCER1A+,CLEC10A+,AREG+,IL1R2+,FCGR2B+
AS-DCCD68+,ITGAX-,LILRA4+,IRF4+,IL17A+,AXL+,SIGLEC6+,LILRA4+,CD74+
pDC-IRF4CD68+,ITGAX-,LILRA4+,IRF4+,CD74-,GZMB+,DERL3+,CLEC4C+,TCF4+
cMono-CD14CD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A-,VCAN+,S100A8+,S100A9+,S100A12+
cMono-CXCL10CD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A-,VCAN+,S100A8+,CXCL10+,CCL2+,HERC5+,SIGLEC1+,IFIT1+,IFIT2+,IFIT3+,IFI44+,ISG15+
cMono-IL1BCD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A-,VCAN+,S100A8+,IL1B+,CCL3+,CCL3L1+,CCL4+,CCL4L2+,CXCL2+,EREG+
cMono-IFI44LCD68+,FCN1+,LYZ+,CTSD+,CD14+,FCGR3A-,VCAN+,S100A8+,CXCL10-,IFIT1-,IFIT2-,IFIT3+,IFI44+,ISG15+,XAF1+
intMono-GFRA2CD68+,CD14+,FCGR3A+,S100A8+,S100A9+,S100A12+,GFRA2+,FPR3+,IL4I1+,ATF5+,LIPA+
ncMono-C1QACD68+,CD14-,FCGR3A+,LYZ-,CDKN1C+,SIGLEC10+,SIM25+,C1QA+,C1QB+,C1QC+,LYPD2-,CKB-
ncMono-FCGR3ACD68+,CD14-,FCGR3A+,LYZ-,CDKN1C+,SIGLEC10+,SIM25+,LYPD2+,CKB+
ncMono-IFIT1CD68+,CD14-,FCGR3A+,LYZ-,CDKN1C+,SIGLEC10+,SIM25+,LYPD2+,CKB+,IFIT1+,OAS1+,OAS3+,MS4A4A+,HERC5+,GBP1+
ILCCD3D-,IL7R+
ILC2CD3D-,IL7R+,GATA3+,KIT+,FCGR3A-
NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+
NKbrightCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1+,FCGR3A-,CD160+,KLRC1+,XCL1+,GZMK+
Transitional NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1+,FCGR3A+,CD160+,KLRC1+,XCL1+,GZMK+
NKdimCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,B3GAT1+,CX3CR1+
Cycling NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,MKI67+,TYMS+,STMN1+
Mature NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,B3GAT1+,CX3CR1+,CD160+
Terminal NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,B3GAT1+,CX3CR1+,ZEB2+,CD160-
ILC2-IL2RACD3D-,IL7R+,GATA3+,KIT+,FCGR3A-,IL2RA+,ILIR1+
NKbright-XCL1CD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1+,FCGR3A-,CD160+,KLRC1+,XCL1+,GZMK+,IGFBP4+,SELL+,TNFRSF11A+
Transitional NK-GZMKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1+,FCGR3A-,CD160+,XCL1+,GZMK+,CXCR4+,ITGA6+,PIK3R1+,ITGA6+,PDE4B+
Mature NKdim-FCGR3ACD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,CX3CR1+,CD160+,FGFBP2+,GZMB+,SPON2+
Inflamed NKdim-IFIT1CD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,CX3CR1+,CD160+,IFIT1+,OAS3+,IFI44L+
Ternimal NKdim-CD160negCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,NCAM1-,FCGR3A+,B3GAT1+,CX3CR1+,ZEB2+,CD160-,LILRB1+,ZNF700+,PCSK7+,CLEC2D+
Cycling NKCD3D-,IL7R-,NCR1+,KLRC1+,KLRD1+,MKI67+,TYMS+,STMN1+