About TrueBlood
The TrueBlood database is a comprehensive blood and bone marrow single cell database that integrates data collection and interactive analysis. We collected single-cell transcriptome and chromatin accessibility data from blood or bone marrow from 10 projects, about 2000 normal or disease samples. Hope this database can help doctors and researchers!
Datasets
- Data visualization
TrueBlood uses Cirrocumulus (https://cirrocumulus.readthedocs.io/en/latest/) for dataset visualization. Cirrocumulus is an interactive visualization tool for large-scale single-cell data. The data visualization page consists of five parts: a section selector, a top toolbar, a sidebar, a main canvas, and a gallery.- The section selector on the top allows users to select a specific section in the dataset.
- The top toolbar displays the number of cells and the number of selected cells in the dataset on the left. The right part has three buttons: EMBEDDINGS, DISTRIBUTIONS, and a moon symbol. The EMBEDDINGS button shows the default canvas interface. The DISTRIBUTIONS option allows users to explore the differential gene expression across cell clusters with a dot plot, a heat map, or a violin plot. The moon symbol button is the dark model option.
- The left sidebar allows you to select genes/traits to be visualized, select clustering tags, and run differential expression analysis.
- The main canvas shows an interactive 2d or 3D graphic, which can be panned, zoomed, and selected in specific regions using the mouse.
- The gallery, which locates in the bottom, shows thumbnails of selected genes/gene sets. Users can click the thumbnail to display it on the main canvas.
For more details, please visit: https://cirrocumulus.readthedocs.io/en/latest/documentation.html
Download
You can download data of interest from here Datasets.
Contact Us
If you have any questions or intend to put your data into the TrueBlood database, please contact the relevant email below.
Database content: liuchuanyu@genomics.cn
Project cooperation: liuchuanyu@genomics.cn
Website technical feedback: CNGBdb@cngb.org