Software

ST_BarcodeMap: https://github.com/BGIResearch/ST_BarcodeMap
TissueCut: https://github.com/BGIResearch/TissueCut
Bam2Gem: https://github.com/BGIResearch/Bam2Gem
ST_Toolkit: https://github.com/BGIResearch/ST_Toolkit
SAW: https://github.com/BGIResearch/SAW The pipeline for analyzing the Stereo-seq data.

Database

ZESTA: https://db.cngb.org/stomics/zesta/

CNGBdb

Project: https://db.cngb.org/search/project/CNP0002220/ Raw data are available in CNP0002220.

Dataset: https://db.cngb.org/stomics/datasets/STDS0000057

Additional Data

The Brightfield Image, Nucleic Acid Dye Staining Image: https://www.stomics.tech/zebrafish/image_staining
The Spatially Resolved Developmental Trajectories: https://www.stomics.tech/zebrafish/data_index
cisTarget files for zebrafish SCENIC analysis: https://ftp.cngb.org/pub/SciRAID/stomics/STDS0000057/cisTarget/