Software
ST_BarcodeMap:
https://github.com/BGIResearch/ST_BarcodeMap
TissueCut:
https://github.com/BGIResearch/TissueCut
Bam2Gem:
https://github.com/BGIResearch/Bam2Gem
ST_Toolkit:
https://github.com/BGIResearch/ST_Toolkit
SAW:
https://github.com/BGIResearch/SAW
The pipeline for analyzing the Stereo-seq data.
Database
ZESTA: https://db.cngb.org/stomics/zesta/
CNGBdb
Project: https://db.cngb.org/search/project/CNP0002220/ Raw data are available in CNP0002220.
Dataset: https://db.cngb.org/stomics/datasets/STDS0000057
Additional Data
The Brightfield Image, Nucleic Acid Dye Staining Image:
https://www.stomics.tech/zebrafish/image_staining
The Spatially Resolved Developmental Trajectories:
https://www.stomics.tech/zebrafish/data_index
cisTarget files for zebrafish SCENIC analysis:
https://ftp.cngb.org/pub/SciRAID/stomics/STDS0000057/cisTarget/