Software

SAW: https://github.com/STOmics/SAW
ST_BarcodeMap: https://github.com/STOmics/ST_BarcodeMap
HandleBam: https://github.com/STOmics/handleBam
GEM3D_toolkit: https://github.com/BGI-Qingdao/GEM3D_toolkit
VT3D: https://github.com/BGI-Qingdao/VT3D
TOME: https://github.com/ChengxiangQiu/tome_code
Scaled cell-type compositions: https://github.com/saezlab/visium_heart

Database

Zebrafish_VRH: https://db.cngb.org/stomics/zebrafish_VRH/

CNGBdb

Project: https://db.cngb.org/search/project/CNP0005245/ Raw data are available in CNP0005245.

Additional Data

3D viewer: https://www.bgiocean.com/zebrafish_VRH/

Source Code: https://github.com/BGI-Qingdao/ZebrafishHeartRegeneration_project

Stereo-seq Protocol: https://db.cngb.org/stomics/mosta/stereo.seq/

Contact

lilei2@genomics.cn; guolidong@genomics.cn