Software
SAW:
https://github.com/STOmics/SAW
ST_BarcodeMap:
https://github.com/STOmics/ST_BarcodeMap
HandleBam:
https://github.com/STOmics/handleBam
GEM3D_toolkit:
https://github.com/BGI-Qingdao/GEM3D_toolkit
VT3D:
https://github.com/BGI-Qingdao/VT3D
TOME:
https://github.com/ChengxiangQiu/tome_code
Scaled cell-type compositions:
https://github.com/saezlab/visium_heart
Database
Zebrafish_VRH: https://db.cngb.org/stomics/zebrafish_VRH/
CNGBdb
Project: https://db.cngb.org/search/project/CNP0005245/ Raw data are available in CNP0005245.
Additional Data
3D viewer: https://www.bgiocean.com/zebrafish_VRH/
Source Code: https://github.com/BGI-Qingdao/ZebrafishHeartRegeneration_project
Stereo-seq Protocol: https://db.cngb.org/stomics/mosta/stereo.seq/
Contact