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stomics
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stomics + single cell sequencing

stomics (44 files)

You can use Aspera to download the data. Here is the help document.

File name Size
00.00h_E0-1h_a_new_final_modified.h5ad7M
01.60h_E2-2.5h_b_new_final_modified.h5ad5M
01.89h_E4-8h_i_new_final_modified.h5ad18M
03.22h_E1-2h_d_all_final_modified.h5ad14M
03.27h_E2-2.5h_a_new_final_modified.h5ad9M
03.72h_E4-8h_f_new_final_modified.h5ad23M
04.56h_E4-8h_h_new_final_modified.h5ad38M
04.78h_E0-1h_c_new_final_modified.h5ad23M
06.41h_E8-10h_c_new_final_modified.h5ad34M
07.33h_E3.5-4h_d_new_final_modified.h5ad31M
07.62h_E8-10h_b_new_final_modified.h5ad54M
08.84h_E4-8h_g_new_final_modified.h5ad53M
09.08h_E4-8h_e_new_final_modified.h5ad57M
10.26h_E3.5-4h_g_new_final_modified.h5ad61M
12.94h_E10-12h_f_new_final_modified.h5ad70M
13.26h_E10-12h_e_new_final_modified.h5ad66M
13.79h_E10-12h_d_new_final_modified.h5ad65M
15.75h_E12-14h_a_all_final_modified.h5ad71M
15.77h_E12-14h_b_new_final_modified.h5ad68M
16.32h_E12-14h_c_new_final_modified.h5ad72M
16.53h_E16-18h_b_new_final_modified.h5ad58M
16.57h_E16-18h_a_new_final_modified.h5ad48M
16.63h_E16-18h_e_new_final_modified.h5ad52M
16.88h_E14-16h_d_new_final_modified.h5ad88M
17.34h_E14-16h_c_all_final_modified.h5ad57M
17.61h_E14-16h_f_all_final_modified.h5ad67M
18.39h_E2.5-3h_d_new_final_modified.h5ad42M
18.97h_E2.5-3h_c_new_final_modified.h5ad36M
19.84h_E18-20h_d_new_final_modified.h5ad50M
20.54h_E20-22h_a_all_final_modified.h5ad55M
L1-early_a_cellbin_final_modified.h5ad97M
L1-early_b_cellbin_final_modified.h5ad99M
L1-early_e_cellbin_final_modified.h5ad66M
L1-late_c_cellbin_final_modified.h5ad149M
L1-late_d_cellbin_final_modified.h5ad129M
L2-early_b_cellbin_final_modified.h5ad132M
L2-late_d_cellbin_final_modified.h5ad193M
L3-early_cellbin_final_realign_modified.h5ad648M
L3-late_cellbin_final_modified.h5ad2.2G
PUPA-12h_cellbin_final_modified.h5ad198M
PUPA-24h_cellbin_final_modified.h5ad447M
PUPA-48h_cellbin_final_modified.h5ad348M
PUPA-60h_cellbin_final_modified.h5ad384M
PUPA-72h_cellbin_final_modified.h5ad364M

single cell sequencing (7 files)

You can use Aspera to download the data. Here is the help document.

File name Size
coembed_CNS_modified.h5ad3.5G
coembed_germ_layer_ectoderm_modified.h5ad11.53G
coembed_germ_layer_endoderm_modified.h5ad1.33G
coembed_germ_layer_mesoderm_modified.h5ad4.26G
wcoembed_whole_embeding_downsampled_modified.h5ad12.08G
ATAC_CNS_modified.h5ad2.69G
ATAC_whole_embedding_modified.h5ad15.74G

stomics + single cell sequencing (29 files)

File name Size
E0.0_dataset_reconst.h5ad119M
E1.6_dataset_reconst.h5ad102M
E1.89_dataset_reconst.h5ad304M
E3.22_dataset_reconst.h5ad308M
E3.27_dataset_reconst.h5ad197M
E3.72_dataset_reconst.h5ad498M
E4.56_dataset_reconst.h5ad930M
E4.78_dataset_reconst.h5ad579M
E6.41_dataset_reconst.h5ad840M
E7.33_dataset_reconst.h5ad903M
E7.62_dataset_reconst.h5ad1.58G
E8.84_dataset_reconst.h5ad1.63G
E9.08_dataset_reconst.h5ad1.51G
E10.26_dataset_reconst.h5ad1.91G
E12.94_dataset_reconst.h5ad1.95G
E13.79_dataset_reconst.h5ad1.87G
E15.75_dataset_reconst.h5ad2G
E15.77_dataset_reconst.h5ad1.96G
E16.32_dataset_reconst.h5ad2.03G
E16.53_dataset_reconst.h5ad1.58G
E16.57_dataset_reconst.h5ad1.31G
E16.63_dataset_reconst.h5ad1.39G
E16.88_dataset_reconst.h5ad2.42G
E17.34_dataset_reconst.h5ad1.54G
E17.61_dataset_reconst.h5ad1.81G
E18.39_dataset_reconst.h5ad1.09G
E18.97_dataset_reconst.h5ad919M
E19.84_dataset_reconst.h5ad1.55G
E20.54_dataset_reconst.h5ad1.7G