h5ad file (31 files)
Stereo-seq data from each section of axolotl telencephalon regeneration and development in ARTISTA database, including segmented cell bin matrix, cell coordinates and annotation metadata. H5ad format.
You can use Aspera to download the data. Here is the help document.
File name | Size |
---|---|
10DPI_1.h5ad | 808M |
10DPI_2.h5ad | 560M |
10DPI_3.h5ad | 515M |
10DPIs.h5ad | 1.8G |
15DPI_1.h5ad | 439M |
15DPI_2.h5ad | 484M |
15DPI_3.h5ad | 418M |
15DPI_4.h5ad | 522M |
15DPIs.h5ad | 1.8G |
20DPI_1.h5ad | 666M |
20DPI_2.h5ad | 841M |
20DPI_3.h5ad | 591M |
20DPIs.h5ad | 2.0G |
2DPI_1.h5ad | 531M |
2DPI_2.h5ad | 491M |
2DPI_3.h5ad | 449M |
2DPIs.h5ad | 1.4G |
30DPI.h5ad | 337M |
5DPI_1.h5ad | 506M |
5DPI_2.h5ad | 653M |
5DPI_3.h5ad | 490M |
5DPIs.h5ad | 1.6G |
60DPI.h5ad | 367M |
Adult.h5ad | 379M |
Control_Juv.h5ad | 289M |
Development.h5ad | 1.4G |
Meta.h5ad | 290M |
Regeneration.h5ad | 3.6G |
Stage44.h5ad | 35M |
Stage54.h5ad | 172M |
Stage57.h5ad | 302M |
RDS file (24 files)
Stereo-seq data from each section of axolotl telencephalon regeneration and development in ARTISTA database, including segmented cell bin matrix, cell coordinates and annotation metadata. RDS format.
File name | Size |
---|---|
10DPI_1.rds | 344M |
10DPI_2.rds | 362M |
10DPI_3.rds | 370M |
15DPI_1.rds | 373M |
15DPI_2.rds | 396M |
15DPI_3.rds | 354M |
15DPI_4.rds | 429M |
20DPI_1.rds | 404M |
20DPI_2.rds | 460M |
20DPI_3.rds | 413M |
2DPI_1.rds | 313M |
2DPI_2.rds | 311M |
2DPI_3.rds | 340M |
30DPI.rds | 317M |
5DPI_1.rds | 318M |
5DPI_2.rds | 335M |
5DPI_3.rds | 333M |
60DPI.rds | 358M |
Adult.rds | 312M |
Control_Juv.rds | 334M |
Meta.rds | 260M |
Stage44.rds | 45M |
Stage54.rds | 142M |
Stage57.rds | 234M |
Bin1 file (24 files)
Gene expression matrix for each axolotl telencephalon regeneration and development. Columns, "X" and "Y" correspond to the coordinates of each DNB on the captured chip, "MIDCounts/CIDCounts" corresponds to the number of UMI for each gene at each DNB.
File name | Size |
---|---|
10DPI_1.gem.gz | 443M |
10DPI_2.gem.gz | 264M |
10DPI_3.gem.gz | 242M |
15DPI_1.gem.gz | 260M |
15DPI_2.gem.gz | 239M |
15DPI_3.gem.gz | 185M |
15DPI_4.gem.gz | 256M |
20DPI_1.gem.gz | 495M |
20DPI_2.gem.gz | 445M |
20DPI_3.gem.gz | 527M |
2DPI_1.gem.gz | 742M |
2DPI_2.gem.gz | 253M |
2DPI_3.gem.gz | 466M |
30DPI.gem.gz | 137M |
5DPI_1.gem.gz | 275M |
5DPI_2.gem.gz | 431M |
5DPI_3.gem.gz | 283M |
60DPI.gem.gz | 142M |
Adult.gem.gz | 201M |
Control_Juv.gem.gz | 79M |
Meta.gem.gz | 130M |
Stage44.gem.gz | 9.0M |
Stage54.gem.gz | 82M |
Stage57.gem.gz | 175M |
Cell_bin file (24 files)
Gene expression matrix of the segmented single-cell for each axolotl telencephalon regeneration and development sections. "cell" corresponds to the ID of each segmented single-cell.
File name | Size |
---|---|
10DPI_1_scgem.csv.gz | 205M |
10DPI_2_scgem.csv.gz | 225M |
10DPI_3_scgem.csv.gz | 230M |
15DPI_1_scgem.csv.gz | 233M |
15DPI_2_scgem.csv.gz | 252M |
15DPI_3_scgem.csv.gz | 176M |
15DPI_4_scgem.csv.gz | 257M |
20DPI_1_scgem.csv.gz | 237M |
20DPI_2_scgem.csv.gz | 315M |
20DPI_3_scgem.csv.gz | 241M |
2DPI_1_scgem.csv.gz | 243M |
2DPI_2_scgem.csv.gz | 188M |
2DPI_3_scgem.csv.gz | 197M |
30DPI_scgem.csv.gz | 150M |
5DPI_1_scgem.csv.gz | 190M |
5DPI_2_scgem.csv.gz | 226M |
5DPI_3_scgem.csv.gz | 217M |
60DPI_scgem.csv.gz | 151M |
Adult_scgem.csv.gz | 158M |
Control_Juv_scgem.csv.gz | 83M |
Meta_scgem.csv.gz | 106M |
Stage44_scgem.csv.gz | 12M |
Stage54_scgem.csv.gz | 97M |
Stage57_scgem.csv.gz | 188M |
Image of nuclei acid staining (23 files)
Nuclei acid staining for the sections used for single-cell segmentation.
File name | Size |
---|---|
10DPI_1.tif | 30M |
10DPI_2.tif | 30M |
10DPI_3.tif | 29M |
15DPI_1.tif | 97M |
15DPI_2.tif | 99M |
15DPI_3.tif | 85M |
15DPI_4.tif | 100M |
20DPI_1.tif | 40M |
20DPI_2.tif | 35M |
20DPI_3.tif | 35M |
2DPI_1.tif | 31M |
2DPI_2.tif | 34M |
2DPI_3.tif | 27M |
30DPI_60DPI.tif | 180M |
5DPI_1.tif | 22M |
5DPI_2.tif | 38M |
5DPI_3.tif | 34M |
Adult.tif | 696M |
Control_Juv.tif | 164M |
Meta.tif | 398M |
Stage44.tif | 126M |
Stage54.tif | 113M |
Stage57.tif | 111M |