h5ad file (31 files)
Stereo-seq data from each section of axolotl telencephalon regeneration and development in ARTISTA database, including segmented cell bin matrix, cell coordinates and annotation metadata. H5ad format.
| File name | Size |
|---|---|
| 10DPI_1.h5ad | 808M |
| 10DPI_2.h5ad | 560M |
| 10DPI_3.h5ad | 515M |
| 10DPIs.h5ad | 1.8G |
| 15DPI_1.h5ad | 439M |
| 15DPI_2.h5ad | 484M |
| 15DPI_3.h5ad | 418M |
| 15DPI_4.h5ad | 522M |
| 15DPIs.h5ad | 1.8G |
| 20DPI_1.h5ad | 666M |
| 20DPI_2.h5ad | 841M |
| 20DPI_3.h5ad | 591M |
| 20DPIs.h5ad | 2.0G |
| 2DPI_1.h5ad | 531M |
| 2DPI_2.h5ad | 491M |
| 2DPI_3.h5ad | 449M |
| 2DPIs.h5ad | 1.4G |
| 30DPI.h5ad | 337M |
| 5DPI_1.h5ad | 506M |
| 5DPI_2.h5ad | 653M |
| 5DPI_3.h5ad | 490M |
| 5DPIs.h5ad | 1.6G |
| 60DPI.h5ad | 367M |
| Adult.h5ad | 379M |
| Control_Juv.h5ad | 289M |
| Development.h5ad | 1.4G |
| Meta.h5ad | 290M |
| Regeneration.h5ad | 3.6G |
| Stage44.h5ad | 35M |
| Stage54.h5ad | 172M |
| Stage57.h5ad | 302M |
RDS file (24 files)
Stereo-seq data from each section of axolotl telencephalon regeneration and development in ARTISTA database, including segmented cell bin matrix, cell coordinates and annotation metadata. RDS format.
| File name | Size |
|---|---|
| 10DPI_1.rds | 344M |
| 10DPI_2.rds | 362M |
| 10DPI_3.rds | 370M |
| 15DPI_1.rds | 373M |
| 15DPI_2.rds | 396M |
| 15DPI_3.rds | 354M |
| 15DPI_4.rds | 429M |
| 20DPI_1.rds | 404M |
| 20DPI_2.rds | 460M |
| 20DPI_3.rds | 413M |
| 2DPI_1.rds | 313M |
| 2DPI_2.rds | 311M |
| 2DPI_3.rds | 340M |
| 30DPI.rds | 317M |
| 5DPI_1.rds | 318M |
| 5DPI_2.rds | 335M |
| 5DPI_3.rds | 333M |
| 60DPI.rds | 358M |
| Adult.rds | 312M |
| Control_Juv.rds | 334M |
| Meta.rds | 260M |
| Stage44.rds | 45M |
| Stage54.rds | 142M |
| Stage57.rds | 234M |
Bin1 file (24 files)
Gene expression matrix for each axolotl telencephalon regeneration and development. Columns, "X" and "Y" correspond to the coordinates of each DNB on the captured chip, "MIDCounts/CIDCounts" corresponds to the number of UMI for each gene at each DNB.
| File name | Size |
|---|---|
| 10DPI_1.gem.gz | 443M |
| 10DPI_2.gem.gz | 264M |
| 10DPI_3.gem.gz | 242M |
| 15DPI_1.gem.gz | 260M |
| 15DPI_2.gem.gz | 239M |
| 15DPI_3.gem.gz | 185M |
| 15DPI_4.gem.gz | 256M |
| 20DPI_1.gem.gz | 495M |
| 20DPI_2.gem.gz | 445M |
| 20DPI_3.gem.gz | 527M |
| 2DPI_1.gem.gz | 742M |
| 2DPI_2.gem.gz | 253M |
| 2DPI_3.gem.gz | 466M |
| 30DPI.gem.gz | 137M |
| 5DPI_1.gem.gz | 275M |
| 5DPI_2.gem.gz | 431M |
| 5DPI_3.gem.gz | 283M |
| 60DPI.gem.gz | 142M |
| Adult.gem.gz | 201M |
| Control_Juv.gem.gz | 79M |
| Meta.gem.gz | 130M |
| Stage44.gem.gz | 9.0M |
| Stage54.gem.gz | 82M |
| Stage57.gem.gz | 175M |
Cell_bin file (24 files)
Gene expression matrix of the segmented single-cell for each axolotl telencephalon regeneration and development sections. "cell" corresponds to the ID of each segmented single-cell.
| File name | Size |
|---|---|
| 10DPI_1_scgem.csv.gz | 205M |
| 10DPI_2_scgem.csv.gz | 225M |
| 10DPI_3_scgem.csv.gz | 230M |
| 15DPI_1_scgem.csv.gz | 233M |
| 15DPI_2_scgem.csv.gz | 252M |
| 15DPI_3_scgem.csv.gz | 176M |
| 15DPI_4_scgem.csv.gz | 257M |
| 20DPI_1_scgem.csv.gz | 237M |
| 20DPI_2_scgem.csv.gz | 315M |
| 20DPI_3_scgem.csv.gz | 241M |
| 2DPI_1_scgem.csv.gz | 243M |
| 2DPI_2_scgem.csv.gz | 188M |
| 2DPI_3_scgem.csv.gz | 197M |
| 30DPI_scgem.csv.gz | 150M |
| 5DPI_1_scgem.csv.gz | 190M |
| 5DPI_2_scgem.csv.gz | 226M |
| 5DPI_3_scgem.csv.gz | 217M |
| 60DPI_scgem.csv.gz | 151M |
| Adult_scgem.csv.gz | 158M |
| Control_Juv_scgem.csv.gz | 83M |
| Meta_scgem.csv.gz | 106M |
| Stage44_scgem.csv.gz | 12M |
| Stage54_scgem.csv.gz | 97M |
| Stage57_scgem.csv.gz | 188M |
Image of nuclei acid staining (23 files)
Nuclei acid staining for the sections used for single-cell segmentation.
| File name | Size |
|---|---|
| 10DPI_1.tif | 30M |
| 10DPI_2.tif | 30M |
| 10DPI_3.tif | 29M |
| 15DPI_1.tif | 97M |
| 15DPI_2.tif | 99M |
| 15DPI_3.tif | 85M |
| 15DPI_4.tif | 100M |
| 20DPI_1.tif | 40M |
| 20DPI_2.tif | 35M |
| 20DPI_3.tif | 35M |
| 2DPI_1.tif | 31M |
| 2DPI_2.tif | 34M |
| 2DPI_3.tif | 27M |
| 30DPI_60DPI.tif | 180M |
| 5DPI_1.tif | 22M |
| 5DPI_2.tif | 38M |
| 5DPI_3.tif | 34M |
| Adult.tif | 696M |
| Control_Juv.tif | 164M |
| Meta.tif | 398M |
| Stage44.tif | 126M |
| Stage54.tif | 113M |
| Stage57.tif | 111M |