Arabidopsis Genome Database
The Arabidopsis Genome Database (AGD) is an electronic database freely accessible to the public, providing comprehensive biological information about Arabidopsis thaliana, a widely studied model plant species. This database serves a multitude of purposes, including fundamental research, disease analysis and treatment, drug discovery, plant nutrition, and population genetics. The AGD is designed to encompass or provide links to five primary categories of datasets: 1) genomes, 2) gene annotations, 3) genetic variations, 4) gene expression, and 5) microbiome.
Gene
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Stomics spots
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Microbiomes
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Individuals
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Genome
Arabidopsis thaliana has a genome size of ~135 Mb, and a haploid chromosome number of five.
Expression
The Arabidopsis expression database focuses on gene expression patterns in different Arabidopsis tissues.
Variation
The Arabidopsis variation database is the latest 1001 variation data set, covering more than 10 million variant loci across 1,135 samples.
Microbiome
The Arabidopsis microbiome database originates from the core Arabidopsis thaliana root microbiome.
Annotation
This Arabidopsis annotation is based on data from Araport11 gene annotation.
Tools
Gene search
Search in gene-level.
Genome browser
Graphical interface for displaying information for genomic data.
Stomics
Comprehensive repository under spatial transcriptomics topics.